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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
VASKAIFYHAGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEAEKAGVKSVPALV
IDGAAFHINFGAGIDDLKGS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2k8s-a1-m1-cB 80 80 1.0000 1.0000 1.0000 3.52e-53 2k8s-a1-m1-cA_2k8s-a1-m1-cB
2 2k8s-a1-m1-cA 80 80 1.0000 1.0000 1.0000 3.52e-53 2k8s-a1-m1-cA_2k8s-a1-m1-cB
3 2ayt-a4-m1-cA 230 73 0.3125 0.1087 0.3425 0.028 2ayt-a4-m1-cA_2ayt-a4-m1-cB
4 2ayt-a3-m6-cA 230 73 0.3125 0.1087 0.3425 0.028 2ayt-a3-m3-cA_2ayt-a3-m6-cA
5 2ayt-a3-m3-cA 230 73 0.3125 0.1087 0.3425 0.028 2ayt-a3-m3-cA_2ayt-a3-m6-cA, 2ayt-a3-m3-cA_2ayt-a3-m6-cB
6 2ayt-a3-m2-cA 230 73 0.3125 0.1087 0.3425 0.028 2ayt-a3-m2-cA_2ayt-a3-m6-cB
7 2ayt-a4-m1-cB 230 73 0.3125 0.1087 0.3425 0.028 2ayt-a4-m1-cA_2ayt-a4-m1-cB
8 2ayt-a3-m6-cB 230 73 0.3125 0.1087 0.3425 0.028 2ayt-a3-m2-cA_2ayt-a3-m6-cB, 2ayt-a3-m3-cA_2ayt-a3-m6-cB, 2ayt-a3-m5-cB_2ayt-a3-m6-cB
9 2ayt-a3-m5-cB 230 73 0.3125 0.1087 0.3425 0.028 2ayt-a3-m5-cB_2ayt-a3-m6-cB
10 1nm3-a1-m2-cB 232 76 0.3000 0.1034 0.3158 0.048 1nm3-a1-m1-cA_1nm3-a1-m2-cB, 1nm3-a1-m2-cA_1nm3-a1-m2-cB
11 1nm3-a1-m2-cA 230 76 0.3000 0.1043 0.3158 0.049 1nm3-a1-m2-cA_1nm3-a1-m2-cB
12 1nm3-a1-m1-cA 230 76 0.3000 0.1043 0.3158 0.049 1nm3-a1-m1-cA_1nm3-a1-m2-cB
13 2i87-a1-m1-cB 344 28 0.1500 0.0349 0.4286 0.96 2i87-a1-m1-cB_2i87-a1-m1-cA
14 2i87-a1-m1-cA 345 28 0.1500 0.0348 0.4286 0.96 2i87-a1-m1-cB_2i87-a1-m1-cA
15 2mzc-a1-m1-cB 92 78 0.2750 0.2391 0.2821 1.5 2mzc-a1-m1-cA_2mzc-a1-m1-cB
16 2mzc-a1-m1-cA 92 78 0.2750 0.2391 0.2821 1.5 2mzc-a1-m1-cA_2mzc-a1-m1-cB
17 7eku-a1-m1-cB 1498 31 0.1750 0.0093 0.4516 1.6 7eku-a1-m1-cB_7eku-a1-m1-cA
18 7eku-a1-m1-cA 1525 31 0.1750 0.0092 0.4516 1.6 7eku-a1-m1-cB_7eku-a1-m1-cA
19 7ejp-a1-m1-cB 1526 31 0.1750 0.0092 0.4516 1.6 7ejp-a1-m1-cA_7ejp-a1-m1-cB
20 7ejp-a1-m1-cA 1526 31 0.1750 0.0092 0.4516 1.6 7ejp-a1-m1-cA_7ejp-a1-m1-cB
21 7oeq-a1-m3-cA 259 44 0.1875 0.0579 0.3409 1.8 7oeq-a1-m2-cA_7oeq-a1-m3-cA
22 7oeq-a1-m2-cA 259 44 0.1875 0.0579 0.3409 1.8 7oeq-a1-m2-cA_7oeq-a1-m3-cA
23 3egw-a1-m2-cA 1244 74 0.2875 0.0185 0.3108 3.8 3egw-a1-m1-cA_3egw-a1-m2-cA
24 3egw-a1-m1-cA 1244 74 0.2875 0.0185 0.3108 3.8 3egw-a1-m1-cA_3egw-a1-m2-cA
25 6ns4-a1-m1-cA 685 40 0.1750 0.0204 0.3500 3.9 6ns4-a1-m1-cB_6ns4-a1-m1-cA
26 6ns4-a1-m1-cB 670 40 0.1750 0.0209 0.3500 4.1 6ns4-a1-m1-cB_6ns4-a1-m1-cA
27 7t88-a1-m2-cA 327 51 0.2000 0.0489 0.3137 4.8 7t88-a1-m1-cA_7t88-a1-m2-cA
28 7t88-a1-m1-cA 327 51 0.2000 0.0489 0.3137 4.8 7t88-a1-m1-cA_7t88-a1-m2-cA
29 3f7c-a1-m2-cA 192 39 0.1625 0.0677 0.3333 7.8 3f7c-a1-m1-cA_3f7c-a1-m2-cA
30 3f7c-a1-m1-cA 192 39 0.1625 0.0677 0.3333 7.8 3f7c-a1-m1-cA_3f7c-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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