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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
VAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSSAETAP
GVHKRYFRKIKNLISAFQKPDQGIVIPLQYPVEK

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1d1z-a2-m1-cB 94 94 1.0000 1.0000 1.0000 1.52e-65 1d1z-a2-m1-cB_1d1z-a2-m1-cD
2 1d1z-a2-m2-cA 101 101 1.0000 0.9307 0.9307 5.63e-63 1d1z-a2-m1-cD_1d1z-a2-m2-cA
3 1d1z-a2-m1-cD 101 101 1.0000 0.9307 0.9307 5.63e-63 1d1z-a2-m1-cB_1d1z-a2-m1-cD, 1d1z-a2-m1-cD_1d1z-a2-m2-cA
4 1d1z-a1-m1-cD 101 101 1.0000 0.9307 0.9307 5.63e-63 1d1z-a1-m1-cC_1d1z-a1-m1-cD
5 1d1z-a1-m1-cC 101 101 1.0000 0.9307 0.9307 5.63e-63 1d1z-a1-m1-cC_1d1z-a1-m1-cD
6 1opl-a3-m2-cA 451 93 0.3298 0.0687 0.3333 1.68e-11 1opl-a3-m1-cA_1opl-a3-m2-cA
7 1opl-a3-m1-cA 451 93 0.3298 0.0687 0.3333 1.68e-11 1opl-a3-m1-cA_1opl-a3-m2-cA
8 3s9k-a2-m2-cA 114 102 0.3830 0.3158 0.3529 2.30e-08 3s9k-a2-m1-cA_3s9k-a2-m2-cA
9 3s9k-a2-m1-cA 114 102 0.3830 0.3158 0.3529 2.30e-08 3s9k-a2-m1-cA_3s9k-a2-m2-cA
10 2ci8-a1-m2-cA 98 76 0.2447 0.2347 0.3026 2.96e-08 2ci8-a1-m1-cA_2ci8-a1-m2-cA
11 2ci8-a1-m1-cA 98 76 0.2447 0.2347 0.3026 2.96e-08 2ci8-a1-m1-cA_2ci8-a1-m2-cA
12 1k9a-a7-m1-cC 438 91 0.3191 0.0685 0.3297 7.95e-08 1k9a-a7-m2-cD_1k9a-a7-m1-cC
13 1nrv-a1-m1-cB 100 51 0.2128 0.2000 0.3922 9.62e-08 1nrv-a1-m1-cA_1nrv-a1-m1-cB
14 1nrv-a1-m1-cA 100 51 0.2128 0.2000 0.3922 9.62e-08 1nrv-a1-m1-cA_1nrv-a1-m1-cB
15 1a81-a1-m1-cI 254 94 0.2872 0.1063 0.2872 9.23e-07 1a81-a1-m1-cK_1a81-a1-m1-cI
16 1a81-a1-m1-cI 254 42 0.1809 0.0669 0.4048 0.064 1a81-a1-m1-cK_1a81-a1-m1-cI
17 1a81-a1-m1-cK 220 94 0.2872 0.1227 0.2872 9.77e-07 1a81-a1-m1-cG_1a81-a1-m1-cK, 1a81-a1-m1-cK_1a81-a1-m1-cI
18 1a81-a1-m1-cK 220 42 0.1809 0.0773 0.4048 0.081 1a81-a1-m1-cG_1a81-a1-m1-cK, 1a81-a1-m1-cK_1a81-a1-m1-cI
19 1a81-a1-m1-cG 220 94 0.2872 0.1227 0.2872 9.77e-07 1a81-a1-m1-cG_1a81-a1-m1-cK
20 1a81-a1-m1-cG 220 42 0.1809 0.0773 0.4048 0.081 1a81-a1-m1-cG_1a81-a1-m1-cK
21 1a1b-a1-m1-cB 104 74 0.2872 0.2596 0.3649 6.47e-06 1a1b-a1-m1-cB_1a1b-a1-m1-cA
22 1a1b-a1-m1-cA 105 74 0.2872 0.2571 0.3649 6.58e-06 1a1b-a1-m1-cB_1a1b-a1-m1-cA
23 2aug-a2-m3-cB 108 55 0.2021 0.1759 0.3455 8.94e-06 2aug-a2-m1-cB_2aug-a2-m3-cB
24 2aug-a2-m1-cB 108 55 0.2021 0.1759 0.3455 8.94e-06 2aug-a2-m1-cB_2aug-a2-m3-cB
25 1f1w-a3-m3-cA 104 74 0.2766 0.2500 0.3514 3.81e-05 1f1w-a3-m1-cA_1f1w-a3-m3-cA
26 1f1w-a3-m1-cA 104 74 0.2766 0.2500 0.3514 3.81e-05 1f1w-a3-m1-cA_1f1w-a3-m3-cA
27 1f1w-a2-m2-cA 104 74 0.2766 0.2500 0.3514 3.81e-05 1f1w-a2-m1-cA_1f1w-a2-m2-cA
28 1f1w-a2-m1-cA 104 74 0.2766 0.2500 0.3514 3.81e-05 1f1w-a2-m1-cA_1f1w-a2-m2-cA
29 1bkl-a1-m2-cA 110 74 0.2766 0.2364 0.3514 1.12e-04 1bkl-a1-m1-cA_1bkl-a1-m2-cA
30 1bkl-a1-m1-cA 110 74 0.2766 0.2364 0.3514 1.12e-04 1bkl-a1-m1-cA_1bkl-a1-m2-cA
31 4u5w-a1-m1-cB 163 93 0.2766 0.1595 0.2796 5.78e-04 4u5w-a1-m1-cD_4u5w-a1-m1-cB
32 2hck-a1-m1-cB 437 95 0.2979 0.0641 0.2947 5.83e-04 2hck-a1-m1-cA_2hck-a1-m1-cB
33 2hck-a1-m1-cA 437 95 0.2979 0.0641 0.2947 5.83e-04 2hck-a1-m1-cA_2hck-a1-m1-cB
34 1k9a-a7-m2-cD 433 91 0.2872 0.0624 0.2967 0.001 1k9a-a7-m2-cD_1k9a-a7-m1-cC
35 7mp3-a1-m1-cA 102 41 0.1915 0.1765 0.4390 0.002 7mp3-a1-m1-cB_7mp3-a1-m1-cA
36 4wwq-a1-m1-cA 112 55 0.1915 0.1607 0.3273 0.002 4wwq-a1-m1-cA_4wwq-a1-m1-cB
37 4wwq-a1-m1-cB 119 55 0.1915 0.1513 0.3273 0.002 4wwq-a1-m1-cA_4wwq-a1-m1-cB
38 2qms-a2-m2-cD 113 55 0.1915 0.1593 0.3273 0.002 2qms-a2-m1-cB_2qms-a2-m2-cD
39 2qms-a2-m1-cB 113 55 0.1915 0.1593 0.3273 0.002 2qms-a2-m1-cB_2qms-a2-m2-cD
40 3us4-a2-m2-cA 94 50 0.2128 0.2128 0.4000 0.003 3us4-a2-m1-cA_3us4-a2-m2-cA
41 3us4-a2-m1-cA 94 50 0.2128 0.2128 0.4000 0.003 3us4-a2-m1-cA_3us4-a2-m2-cA
42 1cwe-a1-m1-cC 98 37 0.1809 0.1735 0.4595 0.005 1cwe-a1-m1-cA_1cwe-a1-m1-cC
43 1cwe-a1-m1-cA 98 37 0.1809 0.1735 0.4595 0.005 1cwe-a1-m1-cA_1cwe-a1-m1-cC
44 4u17-a2-m2-cB 102 43 0.1702 0.1569 0.3721 0.005 4u17-a2-m1-cB_4u17-a2-m2-cB
45 4u17-a2-m1-cB 102 43 0.1702 0.1569 0.3721 0.005 4u17-a2-m1-cB_4u17-a2-m2-cB
46 1bhh-a1-m1-cA 104 40 0.1809 0.1635 0.4250 0.006 1bhh-a1-m1-cB_1bhh-a1-m1-cA
47 1bhh-a1-m1-cB 103 37 0.1809 0.1650 0.4595 0.007 1bhh-a1-m1-cB_1bhh-a1-m1-cA
48 3ps5-a2-m2-cA 529 40 0.1915 0.0340 0.4500 0.007 3ps5-a2-m1-cA_3ps5-a2-m2-cA
49 3ps5-a2-m1-cA 529 40 0.1915 0.0340 0.4500 0.007 3ps5-a2-m1-cA_3ps5-a2-m2-cA
50 1x27-a1-m1-cF 163 37 0.1809 0.1043 0.4595 0.009 1x27-a1-m1-cA_1x27-a1-m1-cF, 1x27-a1-m1-cD_1x27-a1-m1-cF
51 1x27-a1-m1-cD 163 37 0.1809 0.1043 0.4595 0.009 1x27-a1-m1-cD_1x27-a1-m1-cF
52 1x27-a1-m1-cA 163 37 0.1809 0.1043 0.4595 0.009 1x27-a1-m1-cA_1x27-a1-m1-cF
53 1rqq-a1-m1-cD 83 76 0.2234 0.2530 0.2763 0.030 1rqq-a1-m1-cC_1rqq-a1-m1-cD
54 1rqq-a1-m1-cC 83 76 0.2234 0.2530 0.2763 0.030 1rqq-a1-m1-cC_1rqq-a1-m1-cD
55 7mp3-a1-m1-cB 97 29 0.1489 0.1443 0.4828 0.050 7mp3-a1-m1-cB_7mp3-a1-m1-cA
56 1rpy-a2-m2-cB 85 53 0.1915 0.2118 0.3396 0.050 1rpy-a2-m1-cB_1rpy-a2-m2-cB
57 1rpy-a2-m1-cB 85 53 0.1915 0.2118 0.3396 0.050 1rpy-a2-m1-cB_1rpy-a2-m2-cB
58 4xi2-a1-m2-cA 421 91 0.2766 0.0618 0.2857 0.13 4xi2-a1-m1-cA_4xi2-a1-m2-cA
59 4xi2-a1-m1-cA 421 91 0.2766 0.0618 0.2857 0.13 4xi2-a1-m1-cA_4xi2-a1-m2-cA
60 3we0-a1-m2-cB 540 39 0.1596 0.0278 0.3846 0.46 3we0-a1-m1-cA_3we0-a1-m2-cB
61 3we0-a1-m1-cA 540 39 0.1596 0.0278 0.3846 0.46 3we0-a1-m1-cA_3we0-a1-m2-cB
62 3c1d-a3-m1-cA 143 53 0.1915 0.1259 0.3396 2.5 3c1d-a3-m1-cA_3c1d-a3-m1-cB
63 7wlu-a1-m1-cE 1498 43 0.1596 0.0100 0.3488 2.6 7wlu-a1-m1-cC_7wlu-a1-m1-cE
64 7wlu-a1-m1-cC 1498 43 0.1596 0.0100 0.3488 2.6 7wlu-a1-m1-cC_7wlu-a1-m1-cE
65 7wlt-a1-m1-cE 1353 43 0.1596 0.0111 0.3488 2.7 7wlt-a1-m1-cC_7wlt-a1-m1-cE
66 7wlt-a1-m1-cC 1353 43 0.1596 0.0111 0.3488 2.7 7wlt-a1-m1-cC_7wlt-a1-m1-cE
67 3jac-a1-m1-cC 918 43 0.1596 0.0163 0.3488 2.7 3jac-a1-m1-cA_3jac-a1-m1-cC
68 3jac-a1-m1-cA 918 43 0.1596 0.0163 0.3488 2.7 3jac-a1-m1-cA_3jac-a1-m1-cC
69 3c1d-a3-m1-cB 154 53 0.1915 0.1169 0.3396 2.8 3c1d-a3-m1-cA_3c1d-a3-m1-cB
70 6bpz-a1-m1-cC 900 43 0.1596 0.0167 0.3488 3.0 6bpz-a1-m1-cB_6bpz-a1-m1-cC
71 6bpz-a1-m1-cB 900 43 0.1596 0.0167 0.3488 3.0 6bpz-a1-m1-cB_6bpz-a1-m1-cC
72 6lqi-a1-m1-cC 1301 43 0.1596 0.0115 0.3488 3.2 6lqi-a1-m1-cB_6lqi-a1-m1-cC
73 6lqi-a1-m1-cB 1301 43 0.1596 0.0115 0.3488 3.2 6lqi-a1-m1-cB_6lqi-a1-m1-cC
74 5yb7-a2-m1-cD 549 34 0.1489 0.0255 0.4118 3.6 5yb7-a2-m1-cB_5yb7-a2-m1-cD
75 5yb7-a2-m1-cB 549 34 0.1489 0.0255 0.4118 3.6 5yb7-a2-m1-cB_5yb7-a2-m1-cD

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Reference:
Jacob Schwartz et al.

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