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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
VDLSDEEKDSIYFASLVEKKSRPLNEILEDSKLQNLAQRVFASKARLNYALNDKAQKYNT
LIENGKISEINIYDRLLEQQLQSINLS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2pjw-a2-m2-cV 87 87 1.0000 1.0000 1.0000 8.62e-57 2pjw-a2-m1-cV_2pjw-a2-m2-cV
2 2pjw-a2-m1-cV 87 87 1.0000 1.0000 1.0000 8.62e-57 2pjw-a2-m1-cV_2pjw-a2-m2-cV
3 5ybl-a2-m1-cB 273 54 0.2184 0.0696 0.3519 0.14 5ybl-a2-m1-cC_5ybl-a2-m1-cB
4 5u35-a1-m1-cB 121 60 0.1839 0.1322 0.2667 0.77 5u35-a1-m1-cB_5u35-a1-m1-cA
5 6jws-a1-m1-cA 551 64 0.2529 0.0399 0.3438 0.84 6jws-a1-m1-cA_6jws-a1-m1-cB
6 5u35-a1-m1-cA 125 60 0.1839 0.1280 0.2667 0.89 5u35-a1-m1-cB_5u35-a1-m1-cA
7 6jws-a1-m1-cB 589 48 0.2069 0.0306 0.3750 1.3 6jws-a1-m1-cA_6jws-a1-m1-cB
8 5ybl-a2-m1-cC 252 41 0.1724 0.0595 0.3659 1.6 5ybl-a2-m1-cC_5ybl-a2-m1-cB
9 4xc6-a1-m1-cA 1067 35 0.1494 0.0122 0.3714 7.1 4xc6-a1-m1-cB_4xc6-a1-m1-cA
10 4xc6-a1-m1-cB 1061 35 0.1494 0.0123 0.3714 7.3 4xc6-a1-m1-cB_4xc6-a1-m1-cA
11 3fed-a1-m2-cA 690 88 0.2759 0.0348 0.2727 7.6 3fed-a1-m1-cA_3fed-a1-m2-cA
12 3fed-a1-m1-cA 690 88 0.2759 0.0348 0.2727 7.6 3fed-a1-m1-cA_3fed-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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