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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
VDPAKEAIMKPQLTMLKGLSDAELKALADFILRIAKQAQEKQQQDVAKAIFQQKGCGSCH
QANVDTVGPSLAKIAQAYAGKEDQLIKFLKGEAPAI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5z25-a1-m3-cA 96 96 1.0000 1.0000 1.0000 1.11e-64 5z25-a1-m2-cA_5z25-a1-m3-cA
2 5z25-a1-m2-cA 96 96 1.0000 1.0000 1.0000 1.11e-64 5z25-a1-m2-cA_5z25-a1-m3-cA
3 3x15-a2-m1-cJ 87 50 0.5000 0.5517 0.9600 1.60e-29 3x15-a2-m1-cD_3x15-a2-m1-cJ
4 3x15-a2-m1-cJ 87 32 0.3333 0.3678 1.0000 2.89e-15 3x15-a2-m1-cD_3x15-a2-m1-cJ
5 3x15-a2-m1-cD 87 50 0.5000 0.5517 0.9600 1.60e-29 3x15-a2-m1-cD_3x15-a2-m1-cJ
6 3x15-a2-m1-cD 87 32 0.3333 0.3678 1.0000 2.89e-15 3x15-a2-m1-cD_3x15-a2-m1-cJ
7 3x15-a1-m1-cG 87 50 0.5000 0.5517 0.9600 1.60e-29 3x15-a1-m1-cA_3x15-a1-m1-cG
8 3x15-a1-m1-cG 87 32 0.3333 0.3678 1.0000 2.89e-15 3x15-a1-m1-cA_3x15-a1-m1-cG
9 3x15-a1-m1-cA 87 50 0.5000 0.5517 0.9600 1.60e-29 3x15-a1-m1-cA_3x15-a1-m1-cG
10 3x15-a1-m1-cA 87 32 0.3333 0.3678 1.0000 2.89e-15 3x15-a1-m1-cA_3x15-a1-m1-cG
11 2zxy-a1-m2-cA 86 50 0.5000 0.5581 0.9600 1.72e-29 2zxy-a1-m1-cA_2zxy-a1-m2-cA
12 2zxy-a1-m2-cA 86 32 0.3333 0.3721 1.0000 3.04e-15 2zxy-a1-m1-cA_2zxy-a1-m2-cA
13 2zxy-a1-m1-cA 86 50 0.5000 0.5581 0.9600 1.72e-29 2zxy-a1-m1-cA_2zxy-a1-m2-cA
14 2zxy-a1-m1-cA 86 32 0.3333 0.3721 1.0000 3.04e-15 2zxy-a1-m1-cA_2zxy-a1-m2-cA
15 4zid-a1-m2-cA 80 43 0.1771 0.2125 0.3953 3.14e-05 4zid-a1-m1-cA_4zid-a1-m2-cA
16 4zid-a1-m1-cA 80 43 0.1771 0.2125 0.3953 3.14e-05 4zid-a1-m1-cA_4zid-a1-m2-cA
17 1ynr-a1-m1-cC 80 43 0.1771 0.2125 0.3953 3.14e-05 1ynr-a1-m1-cA_1ynr-a1-m1-cC, 1ynr-a1-m1-cD_1ynr-a1-m1-cC
18 1ynr-a1-m1-cA 80 43 0.1771 0.2125 0.3953 3.14e-05 1ynr-a1-m1-cA_1ynr-a1-m1-cC, 1ynr-a1-m1-cD_1ynr-a1-m1-cA
19 1ynr-a1-m1-cD 79 43 0.1771 0.2152 0.3953 3.29e-05 1ynr-a1-m1-cD_1ynr-a1-m1-cA, 1ynr-a1-m1-cD_1ynr-a1-m1-cC
20 5aus-a1-m1-cA 79 43 0.1771 0.2152 0.3953 0.001 5aus-a1-m1-cA_5aus-a1-m1-cC
21 5aus-a1-m1-cC 83 46 0.1771 0.2048 0.3696 0.004 5aus-a1-m1-cA_5aus-a1-m1-cC
22 5aur-a2-m1-cG 83 46 0.1771 0.2048 0.3696 0.004 5aur-a2-m1-cE_5aur-a2-m1-cG
23 5aur-a2-m1-cE 83 46 0.1771 0.2048 0.3696 0.004 5aur-a2-m1-cE_5aur-a2-m1-cG
24 3x39-a2-m3-cB 82 32 0.1250 0.1463 0.3750 0.006 3x39-a2-m1-cB_3x39-a2-m3-cB
25 3x39-a2-m1-cB 82 32 0.1250 0.1463 0.3750 0.006 3x39-a2-m1-cB_3x39-a2-m3-cB
26 1i8o-a2-m2-cA 113 33 0.1458 0.1239 0.4242 0.047 1i8o-a2-m1-cA_1i8o-a2-m2-cA
27 1i8o-a2-m1-cA 113 33 0.1458 0.1239 0.4242 0.047 1i8o-a2-m1-cA_1i8o-a2-m2-cA
28 1lj9-a1-m1-cB 142 25 0.1146 0.0775 0.4400 0.43 1lj9-a1-m1-cB_1lj9-a1-m1-cA
29 1lj9-a1-m1-cA 144 25 0.1146 0.0764 0.4400 0.44 1lj9-a1-m1-cB_1lj9-a1-m1-cA
30 2hjd-a2-m1-cD 90 36 0.1146 0.1222 0.3056 2.4 2hjd-a2-m1-cC_2hjd-a2-m1-cD
31 2hjd-a2-m1-cC 89 36 0.1146 0.1236 0.3056 2.4 2hjd-a2-m1-cC_2hjd-a2-m1-cD
32 3esb-a1-m2-cA 199 35 0.1250 0.0603 0.3429 5.5 3esb-a1-m1-cA_3esb-a1-m2-cA
33 3esb-a1-m1-cA 199 35 0.1250 0.0603 0.3429 5.5 3esb-a1-m1-cA_3esb-a1-m2-cA
34 1duw-a2-m2-cA 289 23 0.0938 0.0311 0.3913 6.4 1duw-a2-m1-cA_1duw-a2-m2-cA
35 1duw-a2-m1-cA 289 23 0.0938 0.0311 0.3913 6.4 1duw-a2-m1-cA_1duw-a2-m2-cA

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Reference:
Jacob Schwartz et al.

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