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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=83)
VDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDL
ERKVESLQEEIAFLKKLHEEEIQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4ypc-a1-m3-cA 83 83 1.0000 1.0000 1.0000 5.77e-52 4ypc-a1-m2-cA_4ypc-a1-m3-cA
2 4ypc-a1-m2-cA 83 83 1.0000 1.0000 1.0000 5.77e-52 4ypc-a1-m2-cA_4ypc-a1-m3-cA
3 5whf-a1-m2-cE 86 77 0.9277 0.8953 1.0000 1.75e-47 5whf-a1-m2-cH_5whf-a1-m2-cE
4 5whf-a1-m2-cG 88 77 0.9277 0.8750 1.0000 1.97e-47 5whf-a1-m2-cD_5whf-a1-m2-cG, 5whf-a1-m2-cH_5whf-a1-m2-cG
5 5whf-a1-m2-cD 85 77 0.9277 0.9059 1.0000 2.47e-47 5whf-a1-m2-cD_5whf-a1-m2-cG
6 5whf-a1-m2-cH 84 76 0.9157 0.9048 1.0000 8.76e-47 5whf-a1-m2-cH_5whf-a1-m2-cE, 5whf-a1-m2-cH_5whf-a1-m2-cG
7 3uf1-a2-m1-cD 108 83 0.9759 0.7500 0.9759 2.99e-46 3uf1-a2-m1-cC_3uf1-a2-m1-cD
8 3uf1-a2-m1-cC 105 83 0.9759 0.7714 0.9759 3.67e-46 3uf1-a2-m1-cC_3uf1-a2-m1-cD
9 4yv3-a1-m1-cA 75 77 0.9036 1.0000 0.9740 1.72e-42 4yv3-a1-m1-cC_4yv3-a1-m1-cA
10 4yv3-a1-m1-cC 61 63 0.7349 1.0000 0.9683 2.83e-32 4yv3-a1-m1-cC_4yv3-a1-m1-cA
11 6a9p-a1-m1-cH 101 82 0.6265 0.5149 0.6341 1.18e-29 6a9p-a1-m1-cH_6a9p-a1-m1-cA
12 6a9p-a2-m1-cF 100 82 0.6265 0.5200 0.6341 1.28e-29 6a9p-a2-m1-cF_6a9p-a2-m1-cE
13 6a9p-a2-m1-cE 102 83 0.6265 0.5098 0.6265 1.30e-29 6a9p-a2-m1-cE_6a9p-a2-m1-cC, 6a9p-a2-m1-cF_6a9p-a2-m1-cE
14 6a9p-a1-m1-cA 103 83 0.6265 0.5049 0.6265 1.37e-29 6a9p-a1-m1-cH_6a9p-a1-m1-cA
15 6a9p-a2-m1-cC 104 83 0.6265 0.5000 0.6265 1.45e-29 6a9p-a2-m1-cE_6a9p-a2-m1-cC
16 6e2j-a2-m4-cA 107 82 0.3614 0.2804 0.3659 3.76e-13 6e2j-a2-m1-cA_6e2j-a2-m4-cA, 6e2j-a2-m2-cA_6e2j-a2-m4-cA, 6e2j-a2-m3-cA_6e2j-a2-m4-cA
17 6e2j-a2-m3-cA 107 82 0.3614 0.2804 0.3659 3.76e-13 6e2j-a2-m3-cA_6e2j-a2-m4-cA
18 6e2j-a2-m2-cA 107 82 0.3614 0.2804 0.3659 3.76e-13 6e2j-a2-m2-cA_6e2j-a2-m4-cA
19 6e2j-a2-m1-cA 107 82 0.3614 0.2804 0.3659 3.76e-13 6e2j-a2-m1-cA_6e2j-a2-m4-cA
20 3s4r-a1-m1-cA 88 29 0.3494 0.3295 1.0000 8.46e-13 3s4r-a1-m1-cA_3s4r-a1-m1-cB
21 3s4r-a1-m1-cB 91 29 0.3494 0.3187 1.0000 8.61e-13 3s4r-a1-m1-cA_3s4r-a1-m1-cB
22 6e2j-a2-m4-cB 104 83 0.4096 0.3269 0.4096 2.54e-10 6e2j-a2-m2-cB_6e2j-a2-m4-cB
23 6e2j-a2-m2-cB 104 83 0.4096 0.3269 0.4096 2.54e-10 6e2j-a2-m2-cB_6e2j-a2-m4-cB
24 4qqw-a5-m1-cA 911 43 0.1928 0.0176 0.3721 2.0 4qqw-a5-m1-cC_4qqw-a5-m1-cA
25 4qqw-a5-m1-cC 902 43 0.1928 0.0177 0.3721 2.1 4qqw-a5-m1-cC_4qqw-a5-m1-cA
26 1n9w-a1-m1-cB 359 59 0.2771 0.0641 0.3898 2.4 1n9w-a1-m1-cA_1n9w-a1-m1-cB
27 1n9w-a1-m1-cA 356 59 0.2771 0.0646 0.3898 2.4 1n9w-a1-m1-cA_1n9w-a1-m1-cB
28 7eyw-a2-m3-cD 252 55 0.1687 0.0556 0.2545 2.5 7eyw-a2-m3-cD_7eyw-a2-m1-cA
29 7c53-a2-m1-cF 92 56 0.2530 0.2283 0.3750 3.4 7c53-a2-m1-cD_7c53-a2-m1-cF
30 4ihs-a3-m1-cC 90 29 0.1205 0.1111 0.3448 4.0 4ihs-a3-m1-cA_4ihs-a3-m1-cC
31 4ihs-a3-m1-cA 89 29 0.1205 0.1124 0.3448 4.1 4ihs-a3-m1-cA_4ihs-a3-m1-cC
32 3qik-a1-m2-cA 101 29 0.1325 0.1089 0.3793 4.8 3qik-a1-m1-cA_3qik-a1-m2-cA
33 3qik-a1-m1-cA 101 29 0.1325 0.1089 0.3793 4.8 3qik-a1-m1-cA_3qik-a1-m2-cA
34 6mi3-a1-m1-cA 122 44 0.2410 0.1639 0.4545 4.8 6mi3-a1-m1-cA_6mi3-a1-m1-cB
35 6mi3-a1-m1-cB 124 44 0.2410 0.1613 0.4545 4.9 6mi3-a1-m1-cA_6mi3-a1-m1-cB
36 3k1m-a4-m1-cA 300 29 0.1205 0.0333 0.3448 6.8 3k1m-a4-m1-cA_3k1m-a4-m3-cB
37 3k1m-a2-m2-cA 300 29 0.1205 0.0333 0.3448 6.8 3k1m-a2-m1-cA_3k1m-a2-m2-cA
38 3k1m-a2-m1-cA 300 29 0.1205 0.0333 0.3448 6.8 3k1m-a2-m1-cA_3k1m-a2-m2-cA, 3k1m-a2-m1-cA_3k1m-a2-m4-cB
39 3k1m-a1-m1-cA 300 29 0.1205 0.0333 0.3448 6.8 3k1m-a1-m1-cA_3k1m-a1-m1-cB
40 3k1m-a4-m3-cB 305 29 0.1205 0.0328 0.3448 6.9 3k1m-a4-m1-cA_3k1m-a4-m3-cB
41 3k1m-a2-m4-cB 305 29 0.1205 0.0328 0.3448 6.9 3k1m-a2-m1-cA_3k1m-a2-m4-cB
42 3k1m-a1-m1-cB 305 29 0.1205 0.0328 0.3448 6.9 3k1m-a1-m1-cA_3k1m-a1-m1-cB
43 1k38-a1-m1-cA 238 18 0.1205 0.0420 0.5556 7.4 1k38-a1-m1-cB_1k38-a1-m1-cA
44 1k38-a1-m1-cB 234 18 0.1205 0.0427 0.5556 7.5 1k38-a1-m1-cB_1k38-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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