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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=48)
VEQQFDLQKYRQQVRDISREDLEDLFIEVVRQKMAHENIFKGMIRQGS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3cs5-a2-m1-cD 48 48 1.0000 1.0000 1.0000 5.73e-29 3cs5-a2-m1-cC_3cs5-a2-m1-cD
2 3cs5-a2-m1-cC 48 48 1.0000 1.0000 1.0000 5.73e-29 3cs5-a2-m1-cC_3cs5-a2-m1-cD
3 2qdo-a2-m1-cA 53 47 0.2083 0.1887 0.2128 0.30 2qdo-a2-m1-cB_2qdo-a2-m1-cA
4 2qdo-a2-m1-cB 52 47 0.2083 0.1923 0.2128 0.32 2qdo-a2-m1-cB_2qdo-a2-m1-cA
5 7yv9-a1-m1-cY 373 45 0.3542 0.0456 0.3778 6.1 7yv9-a1-m1-cY_7yv9-a1-m1-cX
6 7yv9-a1-m1-cX 376 45 0.3542 0.0452 0.3778 6.4 7yv9-a1-m1-cY_7yv9-a1-m1-cX
7 2chr-a1-m8-cA 370 31 0.2083 0.0270 0.3226 8.4 2chr-a1-m2-cA_2chr-a1-m8-cA, 2chr-a1-m4-cA_2chr-a1-m8-cA, 2chr-a1-m6-cA_2chr-a1-m8-cA
8 2chr-a1-m6-cA 370 31 0.2083 0.0270 0.3226 8.4 2chr-a1-m6-cA_2chr-a1-m8-cA
9 2chr-a1-m4-cA 370 31 0.2083 0.0270 0.3226 8.4 2chr-a1-m4-cA_2chr-a1-m8-cA
10 2chr-a1-m2-cA 370 31 0.2083 0.0270 0.3226 8.4 2chr-a1-m2-cA_2chr-a1-m8-cA

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Reference:
Jacob Schwartz et al.

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