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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=66)
VGRECCLEYFKGAIPLRKLKTWYQTSEDCSRDAIVFVTVQGRAICSDPNNKRVKNAVKYL
QSLERS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1nr4-a5-m3-cE 69 66 1.0000 0.9565 1.0000 3.28e-45 1nr4-a5-m1-cA_1nr4-a5-m3-cE, 1nr4-a5-m3-cF_1nr4-a5-m3-cE, 1nr4-a5-m4-cG_1nr4-a5-m3-cE
2 1nr4-a5-m3-cF 66 66 1.0000 1.0000 1.0000 3.67e-45 1nr4-a5-m3-cF_1nr4-a5-m3-cE
3 1nr4-a5-m4-cG 66 63 0.9545 0.9545 1.0000 4.62e-43 1nr4-a5-m4-cG_1nr4-a5-m3-cE
4 1nr4-a5-m1-cA 67 63 0.9545 0.9403 1.0000 4.90e-43 1nr4-a5-m1-cA_1nr4-a5-m3-cE
5 2q8r-a2-m1-cG 63 55 0.3030 0.3175 0.3636 1.43e-11 2q8r-a2-m1-cF_2q8r-a2-m1-cG
6 2q8r-a2-m1-cF 63 55 0.3030 0.3175 0.3636 1.43e-11 2q8r-a2-m1-cF_2q8r-a2-m1-cG
7 5yam-a1-m1-cB 69 57 0.3333 0.3188 0.3860 8.78e-11 5yam-a1-m1-cA_5yam-a1-m1-cB
8 5yam-a1-m1-cA 69 57 0.3333 0.3188 0.3860 8.78e-11 5yam-a1-m1-cA_5yam-a1-m1-cB
9 2fj2-a2-m1-cC 68 62 0.3485 0.3382 0.3710 1.09e-10 2fj2-a2-m1-cD_2fj2-a2-m1-cC
10 2fj2-a2-m1-cD 67 62 0.3485 0.3433 0.3710 1.11e-10 2fj2-a2-m1-cD_2fj2-a2-m1-cC
11 2vxw-a1-m1-cD 62 62 0.3636 0.3871 0.3871 3.41e-10 2vxw-a1-m1-cD_2vxw-a1-m1-cA, 2vxw-a1-m1-cD_2vxw-a1-m1-cB
12 2vxw-a1-m1-cB 69 62 0.3636 0.3478 0.3871 3.84e-10 2vxw-a1-m1-cD_2vxw-a1-m1-cB
13 2vxw-a1-m1-cA 69 62 0.3636 0.3478 0.3871 3.84e-10 2vxw-a1-m1-cD_2vxw-a1-m1-cA
14 5l2u-a2-m2-cH 64 62 0.3636 0.3750 0.3871 4.26e-10 5l2u-a2-m2-cG_5l2u-a2-m2-cH
15 5l2u-a2-m2-cG 64 62 0.3636 0.3750 0.3871 4.26e-10 5l2u-a2-m2-cG_5l2u-a2-m2-cH, 5l2u-a2-m2-cG_5l2u-a2-m2-cI
16 2l9h-a1-m1-cC 67 62 0.3636 0.3582 0.3871 4.27e-10 2l9h-a1-m1-cA_2l9h-a1-m1-cC
17 2l9h-a1-m1-cA 67 62 0.3636 0.3582 0.3871 4.27e-10 2l9h-a1-m1-cA_2l9h-a1-m1-cC
18 5l2u-a2-m2-cI 65 62 0.3636 0.3692 0.3871 4.50e-10 5l2u-a2-m2-cG_5l2u-a2-m2-cI
19 5dnf-a1-m1-cG 65 62 0.3636 0.3692 0.3871 4.50e-10 5dnf-a1-m1-cE_5dnf-a1-m1-cG
20 5dnf-a1-m1-cE 65 62 0.3636 0.3692 0.3871 4.50e-10 5dnf-a1-m1-cE_5dnf-a1-m1-cG
21 5dnf-a1-m1-cD 65 62 0.3636 0.3692 0.3871 4.50e-10 5dnf-a1-m1-cA_5dnf-a1-m1-cD
22 5dnf-a1-m1-cA 65 62 0.3636 0.3692 0.3871 4.50e-10 5dnf-a1-m1-cA_5dnf-a1-m1-cD
23 1hrj-a1-m1-cB 68 62 0.3636 0.3529 0.3871 4.67e-10 1hrj-a1-m1-cA_1hrj-a1-m1-cB
24 1hrj-a1-m1-cA 68 62 0.3636 0.3529 0.3871 4.67e-10 1hrj-a1-m1-cA_1hrj-a1-m1-cB
25 2ra4-a4-m4-cB 65 60 0.3333 0.3385 0.3667 1.19e-09 2ra4-a4-m2-cB_2ra4-a4-m4-cB
26 2ra4-a4-m2-cB 65 60 0.3333 0.3385 0.3667 1.19e-09 2ra4-a4-m2-cB_2ra4-a4-m4-cB
27 2ra4-a2-m4-cB 65 60 0.3333 0.3385 0.3667 1.19e-09 2ra4-a2-m4-cA_2ra4-a2-m4-cB
28 2ra4-a2-m4-cA 65 60 0.3333 0.3385 0.3667 1.19e-09 2ra4-a2-m4-cA_2ra4-a2-m4-cB
29 6aez-a1-m3-cA 64 62 0.3485 0.3594 0.3710 2.56e-09 6aez-a1-m2-cA_6aez-a1-m3-cA
30 6aez-a1-m2-cA 64 62 0.3485 0.3594 0.3710 2.56e-09 6aez-a1-m2-cA_6aez-a1-m3-cA
31 5ltl-a1-m1-cA 67 54 0.3030 0.2985 0.3704 1.21e-08 5ltl-a1-m1-cA_5ltl-a1-m1-cB
32 5ltl-a1-m1-cB 68 54 0.3030 0.2941 0.3704 1.24e-08 5ltl-a1-m1-cA_5ltl-a1-m1-cB
33 4mhe-a2-m1-cB 69 60 0.3333 0.3188 0.3667 1.52e-08 4mhe-a2-m1-cC_4mhe-a2-m1-cB
34 4mhe-a2-m1-cC 61 60 0.3333 0.3607 0.3667 1.58e-08 4mhe-a2-m1-cC_4mhe-a2-m1-cB
35 6log-a1-m2-cA 63 62 0.3485 0.3651 0.3710 1.77e-08 6log-a1-m1-cA_6log-a1-m2-cA
36 6log-a1-m1-cA 63 62 0.3485 0.3651 0.3710 1.77e-08 6log-a1-m1-cA_6log-a1-m2-cA
37 7s5a-a1-m1-cA 73 60 0.2576 0.2329 0.2833 2.66e-08 7s5a-a1-m1-cA_7s5a-a1-m1-cB
38 7s5a-a1-m1-cB 76 60 0.2576 0.2237 0.2833 2.78e-08 7s5a-a1-m1-cA_7s5a-a1-m1-cB
39 1esr-a1-m2-cA 75 60 0.2576 0.2267 0.2833 3.07e-08 1esr-a1-m1-cA_1esr-a1-m2-cA
40 1esr-a1-m1-cA 75 60 0.2576 0.2267 0.2833 3.07e-08 1esr-a1-m1-cA_1esr-a1-m2-cA
41 1ncv-a1-m1-cB 76 57 0.3030 0.2632 0.3509 5.53e-08 1ncv-a1-m1-cA_1ncv-a1-m1-cB
42 1ncv-a1-m1-cA 76 57 0.3030 0.2632 0.3509 5.53e-08 1ncv-a1-m1-cA_1ncv-a1-m1-cB
43 1f2l-a1-m1-cC 64 47 0.2576 0.2656 0.3617 2.52e-05 1f2l-a1-m1-cC_1f2l-a1-m1-cD
44 1f2l-a1-m1-cA 64 47 0.2576 0.2656 0.3617 2.52e-05 1f2l-a1-m1-cA_1f2l-a1-m1-cD
45 1f2l-a1-m1-cD 70 47 0.2576 0.2429 0.3617 2.76e-05 1f2l-a1-m1-cA_1f2l-a1-m1-cD, 1f2l-a1-m1-cC_1f2l-a1-m1-cD
46 4oij-a1-m1-cB 71 42 0.1970 0.1831 0.3095 0.002 4oij-a1-m1-cA_4oij-a1-m1-cB
47 4oij-a1-m1-cA 71 42 0.1970 0.1831 0.3095 0.002 4oij-a1-m1-cA_4oij-a1-m1-cB
48 2jp1-a1-m1-cB 60 55 0.2424 0.2667 0.2909 0.003 2jp1-a1-m1-cA_2jp1-a1-m1-cB
49 2jp1-a1-m1-cA 60 55 0.2424 0.2667 0.2909 0.003 2jp1-a1-m1-cA_2jp1-a1-m1-cB
50 5eki-a7-m1-cA 72 62 0.2576 0.2361 0.2742 0.021 5eki-a7-m1-cF_5eki-a7-m1-cA
51 5eki-a7-m1-cF 70 61 0.2576 0.2429 0.2787 0.025 5eki-a7-m1-cF_5eki-a7-m1-cA
52 2n54-a1-m1-cB 66 55 0.2121 0.2121 0.2545 0.032 2n54-a1-m1-cA_2n54-a1-m1-cB
53 2n54-a1-m1-cA 66 55 0.2121 0.2121 0.2545 0.032 2n54-a1-m1-cA_2n54-a1-m1-cB
54 2hci-a1-m1-cB 65 59 0.2424 0.2462 0.2712 0.21 2hci-a1-m1-cB_2hci-a1-m1-cA
55 2hci-a1-m1-cA 68 59 0.2424 0.2353 0.2712 0.22 2hci-a1-m1-cB_2hci-a1-m1-cA
56 1tvx-a1-m1-cD 71 30 0.1515 0.1408 0.3333 2.1 1tvx-a1-m1-cB_1tvx-a1-m1-cD, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
57 1tvx-a1-m1-cB 71 30 0.1515 0.1408 0.3333 2.1 1tvx-a1-m1-cB_1tvx-a1-m1-cD
58 4wj1-a2-m2-cA 278 41 0.1667 0.0396 0.2683 2.2 4wj1-a2-m1-cA_4wj1-a2-m2-cA
59 4wj1-a2-m1-cA 278 41 0.1667 0.0396 0.2683 2.2 4wj1-a2-m1-cA_4wj1-a2-m2-cA
60 1tvx-a1-m1-cC 64 30 0.1515 0.1562 0.3333 2.3 1tvx-a1-m1-cA_1tvx-a1-m1-cC, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
61 1tvx-a1-m1-cA 64 30 0.1515 0.1562 0.3333 2.3 1tvx-a1-m1-cA_1tvx-a1-m1-cC
62 1rod-a1-m1-cB 72 43 0.1515 0.1389 0.2326 4.9 1rod-a1-m1-cA_1rod-a1-m1-cB
63 1rod-a1-m1-cA 72 43 0.1515 0.1389 0.2326 4.9 1rod-a1-m1-cA_1rod-a1-m1-cB
64 1qe6-a3-m2-cA 68 39 0.1970 0.1912 0.3333 6.5 1qe6-a3-m2-cA_1qe6-a3-m2-cB
65 1qe6-a3-m2-cB 71 39 0.1970 0.1831 0.3333 6.5 1qe6-a3-m2-cA_1qe6-a3-m2-cB, 1qe6-a3-m2-cB_1qe6-a3-m1-cD
66 1qe6-a3-m1-cD 72 39 0.1970 0.1806 0.3333 7.0 1qe6-a3-m2-cB_1qe6-a3-m1-cD
67 3tlf-a1-m1-cC 252 31 0.1667 0.0437 0.3548 8.1 3tlf-a1-m1-cC_3tlf-a1-m1-cF
68 3tlf-a1-m1-cB 252 31 0.1667 0.0437 0.3548 8.1 3tlf-a1-m1-cB_3tlf-a1-m1-cF
69 3tlf-a3-m1-cF 253 31 0.1667 0.0435 0.3548 8.1 3tlf-a3-m1-cF_3tlf-a3-m1-cE
70 3tlf-a1-m1-cF 253 31 0.1667 0.0435 0.3548 8.1 3tlf-a1-m1-cB_3tlf-a1-m1-cF, 3tlf-a1-m1-cC_3tlf-a1-m1-cF
71 2mgs-a1-m1-cB 71 57 0.2121 0.1972 0.2456 8.3 2mgs-a1-m1-cA_2mgs-a1-m1-cB
72 2mgs-a1-m1-cA 71 57 0.2121 0.1972 0.2456 8.3 2mgs-a1-m1-cA_2mgs-a1-m1-cB
73 3tlf-a3-m1-cE 254 31 0.1667 0.0433 0.3548 8.4 3tlf-a3-m1-cF_3tlf-a3-m1-cE

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Reference:
Jacob Schwartz et al.

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