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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
VHFCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFM
CSIVQGCKRTYLSQRDLQAHINHRHMRAGKPVTRAS

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3vk6-a1-m2-cA 96 96 1.0000 1.0000 1.0000 1.74e-68 3vk6-a1-m1-cA_3vk6-a1-m2-cA
2 3vk6-a1-m1-cA 96 96 1.0000 1.0000 1.0000 1.74e-68 3vk6-a1-m1-cA_3vk6-a1-m2-cA
3 4auq-a1-m1-cE 57 32 0.1250 0.2105 0.3750 0.57 4auq-a1-m1-cB_4auq-a1-m1-cE
4 4auq-a1-m1-cB 57 32 0.1250 0.2105 0.3750 0.57 4auq-a1-m1-cB_4auq-a1-m1-cE
5 5zi6-a4-m1-cH 55 42 0.1458 0.2545 0.3333 4.8 5zi6-a4-m1-cG_5zi6-a4-m1-cH
6 5zi6-a4-m1-cG 55 42 0.1458 0.2545 0.3333 4.8 5zi6-a4-m1-cG_5zi6-a4-m1-cH
7 7ah2-a1-m1-cBBB 58 26 0.1146 0.1897 0.4231 5.1 7ah2-a1-m1-cAAA_7ah2-a1-m1-cBBB
8 7ah2-a1-m1-cAAA 58 26 0.1146 0.1897 0.4231 5.1 7ah2-a1-m1-cAAA_7ah2-a1-m1-cBBB
9 5trb-a1-m2-cA 69 28 0.0938 0.1304 0.3214 9.4 5trb-a1-m1-cA_5trb-a1-m2-cA
10 5trb-a1-m1-cA 69 28 0.0938 0.1304 0.3214 9.4 5trb-a1-m1-cA_5trb-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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