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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=78)
VKAIWADPKEVHDAGGISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDM
ADYIKKLKLPGIHLREES

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4bjq-a4-m3-cF 78 78 1.0000 1.0000 1.0000 5.65e-53 4bjq-a4-m1-cG_4bjq-a4-m3-cF
2 4bjq-a4-m1-cG 77 77 0.9872 1.0000 1.0000 3.04e-52 4bjq-a4-m1-cG_4bjq-a4-m3-cF
3 3ntd-a1-m1-cB 565 50 0.2051 0.0283 0.3200 0.62 3ntd-a1-m1-cA_3ntd-a1-m1-cB
4 3ntd-a1-m1-cA 565 50 0.2051 0.0283 0.3200 0.62 3ntd-a1-m1-cA_3ntd-a1-m1-cB
5 4ocg-a2-m3-cB 565 50 0.2051 0.0283 0.3200 1.5 4ocg-a2-m2-cA_4ocg-a2-m3-cB, 4ocg-a2-m2-cB_4ocg-a2-m3-cB
6 4ocg-a2-m2-cB 565 50 0.2051 0.0283 0.3200 1.5 4ocg-a2-m2-cB_4ocg-a2-m3-cB
7 4ocg-a2-m2-cA 565 50 0.2051 0.0283 0.3200 1.5 4ocg-a2-m2-cA_4ocg-a2-m3-cB
8 4bjp-a1-m2-cA 409 20 0.1667 0.0318 0.6500 1.7 4bjp-a1-m1-cA_4bjp-a1-m2-cA
9 4bjp-a1-m1-cA 409 20 0.1667 0.0318 0.6500 1.7 4bjp-a1-m1-cA_4bjp-a1-m2-cA
10 3ics-a1-m1-cB 538 33 0.1410 0.0204 0.3333 2.1 3ics-a1-m1-cB_3ics-a1-m1-cA
11 3ics-a1-m1-cA 539 33 0.1410 0.0204 0.3333 2.2 3ics-a1-m1-cB_3ics-a1-m1-cA
12 3bjs-a1-m4-cB 376 48 0.1923 0.0399 0.3125 2.7 3bjs-a1-m2-cA_3bjs-a1-m4-cB, 3bjs-a1-m2-cB_3bjs-a1-m4-cB, 3bjs-a1-m4-cA_3bjs-a1-m4-cB
13 3bjs-a1-m2-cB 376 48 0.1923 0.0399 0.3125 2.7 3bjs-a1-m2-cB_3bjs-a1-m4-cB
14 1otf-a1-m1-cF 59 26 0.1282 0.1695 0.3846 2.7 1otf-a1-m1-cC_1otf-a1-m1-cF
15 1otf-a1-m1-cE 59 26 0.1282 0.1695 0.3846 2.7 1otf-a1-m1-cC_1otf-a1-m1-cE
16 1otf-a1-m1-cC 59 26 0.1282 0.1695 0.3846 2.7 1otf-a1-m1-cC_1otf-a1-m1-cE, 1otf-a1-m1-cC_1otf-a1-m1-cF
17 3bjs-a1-m4-cA 370 48 0.1923 0.0405 0.3125 2.8 3bjs-a1-m4-cA_3bjs-a1-m4-cB
18 3bjs-a1-m2-cA 370 48 0.1923 0.0405 0.3125 2.8 3bjs-a1-m2-cA_3bjs-a1-m4-cB
19 4onj-a1-m1-cB 333 32 0.1538 0.0360 0.3750 3.3 4onj-a1-m1-cA_4onj-a1-m1-cB
20 3v4r-a1-m1-cA 586 44 0.1410 0.0188 0.2500 3.3 3v4r-a1-m1-cB_3v4r-a1-m1-cA
21 3v4r-a1-m1-cB 579 44 0.1410 0.0190 0.2500 3.4 3v4r-a1-m1-cB_3v4r-a1-m1-cA
22 4onj-a1-m1-cA 331 32 0.1538 0.0363 0.3750 3.5 4onj-a1-m1-cA_4onj-a1-m1-cB
23 2xwp-a1-m6-cA 257 34 0.1538 0.0467 0.3529 4.8 2xwp-a1-m2-cA_2xwp-a1-m6-cA, 2xwp-a1-m3-cA_2xwp-a1-m6-cA, 2xwp-a1-m5-cA_2xwp-a1-m6-cA
24 2xwp-a1-m5-cA 257 34 0.1538 0.0467 0.3529 4.8 2xwp-a1-m5-cA_2xwp-a1-m6-cA
25 2xwp-a1-m3-cA 257 34 0.1538 0.0467 0.3529 4.8 2xwp-a1-m3-cA_2xwp-a1-m6-cA
26 2xwp-a1-m2-cA 257 34 0.1538 0.0467 0.3529 4.8 2xwp-a1-m2-cA_2xwp-a1-m6-cA
27 1ebu-a2-m1-cD 358 37 0.1667 0.0363 0.3514 5.8 1ebu-a2-m1-cC_1ebu-a2-m1-cD
28 1ebu-a2-m1-cC 358 37 0.1667 0.0363 0.3514 5.8 1ebu-a2-m1-cC_1ebu-a2-m1-cD
29 5mlk-a1-m1-cA 451 22 0.1282 0.0222 0.4545 6.1 5mlk-a1-m1-cB_5mlk-a1-m1-cA
30 1g16-a1-m1-cD 157 48 0.1795 0.0892 0.2917 6.7 1g16-a1-m1-cD_1g16-a1-m1-cC
31 1g16-a1-m1-cB 158 48 0.1795 0.0886 0.2917 6.8 1g16-a1-m1-cB_1g16-a1-m1-cC
32 1g16-a1-m1-cC 164 48 0.1795 0.0854 0.2917 7.3 1g16-a1-m1-cB_1g16-a1-m1-cC, 1g16-a1-m1-cD_1g16-a1-m1-cC
33 4b15-a1-m2-cA 265 39 0.1538 0.0453 0.3077 9.5 4b15-a1-m1-cA_4b15-a1-m2-cA
34 4b15-a1-m1-cA 265 39 0.1538 0.0453 0.3077 9.5 4b15-a1-m1-cA_4b15-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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