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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=64)
VLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVY
LPTH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2yhn-a1-m1-cB 64 64 1.0000 1.0000 1.0000 2.92e-41 2yhn-a1-m1-cA_2yhn-a1-m1-cB
2 2yhn-a1-m1-cA 64 64 1.0000 1.0000 1.0000 2.92e-41 2yhn-a1-m1-cA_2yhn-a1-m1-cB
3 3eb5-a1-m2-cA 65 60 0.3906 0.3846 0.4167 3.28e-14 3eb5-a1-m1-cA_3eb5-a1-m2-cA
4 3eb5-a1-m1-cA 65 60 0.3906 0.3846 0.4167 3.28e-14 3eb5-a1-m1-cA_3eb5-a1-m2-cA
5 4ic3-a1-m1-cA 63 59 0.3438 0.3492 0.3729 8.33e-11 4ic3-a1-m1-cA_4ic3-a1-m1-cB
6 4ic3-a1-m1-cB 64 59 0.3438 0.3438 0.3729 8.71e-11 4ic3-a1-m1-cA_4ic3-a1-m1-cB
7 4auq-a1-m1-cE 57 57 0.3906 0.4386 0.4386 4.01e-10 4auq-a1-m1-cB_4auq-a1-m1-cE
8 4auq-a1-m1-cB 57 57 0.3906 0.4386 0.4386 4.01e-10 4auq-a1-m1-cB_4auq-a1-m1-cE
9 5zi6-a4-m1-cH 55 51 0.2656 0.3091 0.3333 4.81e-04 5zi6-a4-m1-cG_5zi6-a4-m1-cH
10 5zi6-a4-m1-cG 55 51 0.2656 0.3091 0.3333 4.81e-04 5zi6-a4-m1-cG_5zi6-a4-m1-cH
11 4r7e-a1-m2-cA 69 55 0.2812 0.2609 0.3273 0.095 4r7e-a1-m1-cA_4r7e-a1-m2-cA
12 4r7e-a1-m1-cA 69 55 0.2812 0.2609 0.3273 0.095 4r7e-a1-m1-cA_4r7e-a1-m2-cA
13 7zj3-a2-m1-cG 85 48 0.2812 0.2118 0.3750 0.17 7zj3-a2-m1-cG_7zj3-a2-m1-cA
14 7zj3-a2-m1-cA 86 48 0.2812 0.2093 0.3750 0.18 7zj3-a2-m1-cG_7zj3-a2-m1-cA
15 7ah2-a1-m1-cBBB 58 35 0.2031 0.2241 0.3714 0.35 7ah2-a1-m1-cAAA_7ah2-a1-m1-cBBB
16 7ah2-a1-m1-cAAA 58 35 0.2031 0.2241 0.3714 0.35 7ah2-a1-m1-cAAA_7ah2-a1-m1-cBBB
17 6fga-a4-m1-cH 77 53 0.2656 0.2208 0.3208 0.59 6fga-a4-m1-cG_6fga-a4-m1-cH
18 6fga-a4-m1-cG 77 53 0.2656 0.2208 0.3208 0.59 6fga-a4-m1-cG_6fga-a4-m1-cH
19 8adl-a1-m1-cJ 801 60 0.2500 0.0200 0.2667 0.69 8adl-a1-m1-cB_8adl-a1-m1-cJ
20 8adl-a1-m1-cB 801 60 0.2500 0.0200 0.2667 0.69 8adl-a1-m1-cB_8adl-a1-m1-cJ, 8adl-a1-m1-cO_8adl-a1-m1-cB
21 5din-a1-m1-cB 124 50 0.2188 0.1129 0.2800 0.69 5din-a1-m1-cA_5din-a1-m1-cB
22 5din-a1-m1-cA 120 50 0.2188 0.1167 0.2800 0.69 5din-a1-m1-cA_5din-a1-m1-cB
23 6k0w-a2-m1-cC 433 21 0.1406 0.0208 0.4286 2.4 6k0w-a2-m1-cC_6k0w-a2-m1-cA
24 6k0w-a2-m1-cA 528 21 0.1406 0.0170 0.4286 2.4 6k0w-a2-m1-cC_6k0w-a2-m1-cA
25 2xts-a1-m1-cC 389 38 0.1562 0.0257 0.2632 3.0 2xts-a1-m1-cA_2xts-a1-m1-cC
26 2xts-a1-m1-cA 389 38 0.1562 0.0257 0.2632 3.0 2xts-a1-m1-cA_2xts-a1-m1-cC
27 7b5e-a1-m1-cB 718 48 0.1875 0.0167 0.2500 5.1 7b5e-a1-m1-cA_7b5e-a1-m1-cB
28 7b5e-a1-m1-cA 718 48 0.1875 0.0167 0.2500 5.1 7b5e-a1-m1-cA_7b5e-a1-m1-cB
29 7zk3-a1-m1-cB 721 48 0.1875 0.0166 0.2500 5.1 7zk3-a1-m1-cA_7zk3-a1-m1-cB
30 7zk3-a1-m1-cA 721 48 0.1875 0.0166 0.2500 5.1 7zk3-a1-m1-cA_7zk3-a1-m1-cB
31 5h7r-a1-m2-cD 124 29 0.1250 0.0645 0.2759 5.8 5h7r-a1-m1-cD_5h7r-a1-m2-cD
32 5h7r-a1-m1-cD 124 29 0.1250 0.0645 0.2759 5.8 5h7r-a1-m1-cD_5h7r-a1-m2-cD
33 5eya-a1-m1-cF 76 49 0.2656 0.2237 0.3469 7.9 5eya-a1-m1-cF_5eya-a1-m1-cG
34 8adl-a1-m1-cO 786 60 0.2344 0.0191 0.2500 7.9 8adl-a1-m1-cG_8adl-a1-m1-cO, 8adl-a1-m1-cO_8adl-a1-m1-cB
35 8adl-a1-m1-cG 786 60 0.2344 0.0191 0.2500 7.9 8adl-a1-m1-cG_8adl-a1-m1-cO
36 4ppe-a2-m2-cB 67 32 0.1562 0.1493 0.3125 8.4 4ppe-a2-m1-cA_4ppe-a2-m2-cB, 4ppe-a2-m1-cB_4ppe-a2-m2-cB, 4ppe-a2-m2-cA_4ppe-a2-m2-cB
37 4ppe-a2-m1-cB 67 32 0.1562 0.1493 0.3125 8.4 4ppe-a2-m1-cB_4ppe-a2-m2-cB
38 4ppe-a2-m2-cA 66 32 0.1562 0.1515 0.3125 9.1 4ppe-a2-m2-cA_4ppe-a2-m2-cB
39 4ppe-a2-m1-cA 66 32 0.1562 0.1515 0.3125 9.1 4ppe-a2-m1-cA_4ppe-a2-m2-cB
40 5eya-a1-m1-cG 86 49 0.2656 0.1977 0.3469 9.5 5eya-a1-m1-cF_5eya-a1-m1-cG

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Reference:
Jacob Schwartz et al.

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