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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=68)
VNTPSTCCLKYYEKVLPRRLVVGYRKALNCHLPAIIFVTKRNREVCTNPNDDWVQEYIKD
PNLPLLPT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5ltl-a1-m1-cB 68 68 1.0000 1.0000 1.0000 7.37e-46 5ltl-a1-m1-cA_5ltl-a1-m1-cB
2 5ltl-a1-m1-cA 67 67 0.9853 1.0000 1.0000 4.02e-45 5ltl-a1-m1-cA_5ltl-a1-m1-cB
3 2q8r-a2-m1-cG 63 58 0.4118 0.4444 0.4828 1.35e-15 2q8r-a2-m1-cF_2q8r-a2-m1-cG
4 2q8r-a2-m1-cF 63 58 0.4118 0.4444 0.4828 1.35e-15 2q8r-a2-m1-cF_2q8r-a2-m1-cG
5 1ncv-a1-m1-cB 76 61 0.3382 0.3026 0.3770 1.91e-13 1ncv-a1-m1-cA_1ncv-a1-m1-cB
6 1ncv-a1-m1-cA 76 61 0.3382 0.3026 0.3770 1.91e-13 1ncv-a1-m1-cA_1ncv-a1-m1-cB
7 2vxw-a1-m1-cB 69 57 0.3676 0.3623 0.4386 2.99e-12 2vxw-a1-m1-cD_2vxw-a1-m1-cB
8 2vxw-a1-m1-cA 69 57 0.3676 0.3623 0.4386 2.99e-12 2vxw-a1-m1-cD_2vxw-a1-m1-cA
9 4mhe-a2-m1-cB 69 58 0.3529 0.3478 0.4138 3.93e-12 4mhe-a2-m1-cC_4mhe-a2-m1-cB
10 2vxw-a1-m1-cD 62 57 0.3676 0.4032 0.4386 3.97e-12 2vxw-a1-m1-cD_2vxw-a1-m1-cA, 2vxw-a1-m1-cD_2vxw-a1-m1-cB
11 4mhe-a2-m1-cC 61 58 0.3529 0.3934 0.4138 4.37e-12 4mhe-a2-m1-cC_4mhe-a2-m1-cB
12 6aez-a1-m3-cA 64 58 0.3529 0.3750 0.4138 1.53e-11 6aez-a1-m2-cA_6aez-a1-m3-cA
13 6aez-a1-m2-cA 64 58 0.3529 0.3750 0.4138 1.53e-11 6aez-a1-m2-cA_6aez-a1-m3-cA
14 5yam-a1-m1-cB 69 53 0.3824 0.3768 0.4906 1.60e-11 5yam-a1-m1-cA_5yam-a1-m1-cB
15 5yam-a1-m1-cA 69 53 0.3824 0.3768 0.4906 1.60e-11 5yam-a1-m1-cA_5yam-a1-m1-cB
16 1hrj-a1-m1-cB 68 53 0.3529 0.3529 0.4528 1.65e-11 1hrj-a1-m1-cA_1hrj-a1-m1-cB
17 1hrj-a1-m1-cA 68 53 0.3529 0.3529 0.4528 1.65e-11 1hrj-a1-m1-cA_1hrj-a1-m1-cB
18 5l2u-a2-m2-cI 65 53 0.3529 0.3692 0.4528 1.77e-11 5l2u-a2-m2-cG_5l2u-a2-m2-cI
19 5dnf-a1-m1-cG 65 53 0.3529 0.3692 0.4528 1.77e-11 5dnf-a1-m1-cE_5dnf-a1-m1-cG
20 5dnf-a1-m1-cE 65 53 0.3529 0.3692 0.4528 1.77e-11 5dnf-a1-m1-cE_5dnf-a1-m1-cG
21 5dnf-a1-m1-cD 65 53 0.3529 0.3692 0.4528 1.77e-11 5dnf-a1-m1-cA_5dnf-a1-m1-cD
22 5dnf-a1-m1-cA 65 53 0.3529 0.3692 0.4528 1.77e-11 5dnf-a1-m1-cA_5dnf-a1-m1-cD
23 2l9h-a1-m1-cC 67 53 0.3529 0.3582 0.4528 1.85e-11 2l9h-a1-m1-cA_2l9h-a1-m1-cC
24 2l9h-a1-m1-cA 67 53 0.3529 0.3582 0.4528 1.85e-11 2l9h-a1-m1-cA_2l9h-a1-m1-cC
25 5l2u-a2-m2-cH 64 53 0.3529 0.3750 0.4528 1.93e-11 5l2u-a2-m2-cG_5l2u-a2-m2-cH
26 5l2u-a2-m2-cG 64 53 0.3529 0.3750 0.4528 1.93e-11 5l2u-a2-m2-cG_5l2u-a2-m2-cH, 5l2u-a2-m2-cG_5l2u-a2-m2-cI
27 5eki-a7-m1-cA 72 58 0.3235 0.3056 0.3793 2.36e-10 5eki-a7-m1-cF_5eki-a7-m1-cA
28 5eki-a7-m1-cF 70 58 0.3235 0.3143 0.3793 2.65e-10 5eki-a7-m1-cF_5eki-a7-m1-cA
29 6log-a1-m2-cA 63 53 0.3382 0.3651 0.4340 4.74e-10 6log-a1-m1-cA_6log-a1-m2-cA
30 6log-a1-m1-cA 63 53 0.3382 0.3651 0.4340 4.74e-10 6log-a1-m1-cA_6log-a1-m2-cA
31 2fj2-a2-m1-cD 67 60 0.3235 0.3284 0.3667 6.61e-10 2fj2-a2-m1-cD_2fj2-a2-m1-cC
32 2fj2-a2-m1-cC 68 60 0.3235 0.3235 0.3667 6.69e-10 2fj2-a2-m1-cD_2fj2-a2-m1-cC
33 1nr4-a5-m4-cG 66 59 0.3088 0.3182 0.3559 3.48e-09 1nr4-a5-m4-cG_1nr4-a5-m3-cE
34 1nr4-a5-m3-cE 69 59 0.3088 0.3043 0.3559 3.56e-09 1nr4-a5-m1-cA_1nr4-a5-m3-cE, 1nr4-a5-m3-cF_1nr4-a5-m3-cE, 1nr4-a5-m4-cG_1nr4-a5-m3-cE
35 1nr4-a5-m1-cA 67 59 0.3088 0.3134 0.3559 3.80e-09 1nr4-a5-m1-cA_1nr4-a5-m3-cE
36 2ra4-a4-m4-cB 65 60 0.3235 0.3385 0.3667 4.09e-09 2ra4-a4-m2-cB_2ra4-a4-m4-cB
37 2ra4-a4-m2-cB 65 60 0.3235 0.3385 0.3667 4.09e-09 2ra4-a4-m2-cB_2ra4-a4-m4-cB
38 2ra4-a2-m4-cB 65 60 0.3235 0.3385 0.3667 4.09e-09 2ra4-a2-m4-cA_2ra4-a2-m4-cB
39 2ra4-a2-m4-cA 65 60 0.3235 0.3385 0.3667 4.09e-09 2ra4-a2-m4-cA_2ra4-a2-m4-cB
40 2hci-a1-m1-cA 68 56 0.3088 0.3088 0.3750 5.57e-09 2hci-a1-m1-cB_2hci-a1-m1-cA
41 2hci-a1-m1-cB 65 56 0.3088 0.3231 0.3750 5.74e-09 2hci-a1-m1-cB_2hci-a1-m1-cA
42 1nr4-a5-m3-cF 66 54 0.2941 0.3030 0.3704 1.27e-08 1nr4-a5-m3-cF_1nr4-a5-m3-cE
43 1esr-a1-m2-cA 75 61 0.3088 0.2800 0.3443 3.45e-08 1esr-a1-m1-cA_1esr-a1-m2-cA
44 1esr-a1-m1-cA 75 61 0.3088 0.2800 0.3443 3.45e-08 1esr-a1-m1-cA_1esr-a1-m2-cA
45 7s5a-a1-m1-cA 73 61 0.3088 0.2877 0.3443 3.68e-08 7s5a-a1-m1-cA_7s5a-a1-m1-cB
46 7s5a-a1-m1-cB 76 61 0.3088 0.2763 0.3443 3.77e-08 7s5a-a1-m1-cA_7s5a-a1-m1-cB
47 4oij-a1-m1-cB 71 56 0.2794 0.2676 0.3393 1.03e-05 4oij-a1-m1-cA_4oij-a1-m1-cB
48 4oij-a1-m1-cA 71 56 0.2794 0.2676 0.3393 1.03e-05 4oij-a1-m1-cA_4oij-a1-m1-cB
49 2jp1-a1-m1-cB 60 28 0.1765 0.2000 0.4286 0.001 2jp1-a1-m1-cA_2jp1-a1-m1-cB
50 2jp1-a1-m1-cA 60 28 0.1765 0.2000 0.4286 0.001 2jp1-a1-m1-cA_2jp1-a1-m1-cB
51 3hp3-a3-m1-cD 64 31 0.1765 0.1875 0.3871 0.005 3hp3-a3-m1-cD_3hp3-a3-m1-cF
52 3hp3-a3-m1-cF 65 33 0.1765 0.1846 0.3636 0.005 3hp3-a3-m1-cD_3hp3-a3-m1-cF
53 4uai-a1-m1-cB 67 31 0.1765 0.1791 0.3871 0.005 4uai-a1-m1-cB_4uai-a1-m1-cA
54 4uai-a1-m1-cA 68 31 0.1765 0.1765 0.3871 0.005 4uai-a1-m1-cB_4uai-a1-m1-cA
55 1f2l-a1-m1-cD 70 53 0.2353 0.2286 0.3019 0.006 1f2l-a1-m1-cA_1f2l-a1-m1-cD, 1f2l-a1-m1-cC_1f2l-a1-m1-cD
56 1f2l-a1-m1-cC 64 53 0.2353 0.2500 0.3019 0.006 1f2l-a1-m1-cC_1f2l-a1-m1-cD
57 1f2l-a1-m1-cA 64 53 0.2353 0.2500 0.3019 0.006 1f2l-a1-m1-cA_1f2l-a1-m1-cD
58 2n54-a1-m1-cB 66 32 0.1618 0.1667 0.3438 0.008 2n54-a1-m1-cA_2n54-a1-m1-cB
59 2n54-a1-m1-cA 66 32 0.1618 0.1667 0.3438 0.008 2n54-a1-m1-cA_2n54-a1-m1-cB
60 1qe6-a3-m2-cA 68 55 0.2206 0.2206 0.2727 1.0 1qe6-a3-m2-cA_1qe6-a3-m2-cB
61 1qe6-a3-m1-cD 72 55 0.2206 0.2083 0.2727 1.1 1qe6-a3-m2-cB_1qe6-a3-m1-cD
62 1qe6-a3-m2-cB 71 55 0.2206 0.2113 0.2727 1.1 1qe6-a3-m2-cA_1qe6-a3-m2-cB, 1qe6-a3-m2-cB_1qe6-a3-m1-cD
63 1plf-a1-m1-cC 63 56 0.2353 0.2540 0.2857 1.1 1plf-a1-m1-cA_1plf-a1-m1-cC, 1plf-a1-m1-cC_1plf-a1-m1-cD
64 1plf-a1-m1-cA 63 56 0.2353 0.2540 0.2857 1.1 1plf-a1-m1-cA_1plf-a1-m1-cC, 1plf-a1-m1-cA_1plf-a1-m1-cD
65 1plf-a1-m1-cD 65 56 0.2353 0.2462 0.2857 1.3 1plf-a1-m1-cA_1plf-a1-m1-cD, 1plf-a1-m1-cB_1plf-a1-m1-cD, 1plf-a1-m1-cC_1plf-a1-m1-cD
66 1plf-a1-m1-cB 65 56 0.2353 0.2462 0.2857 1.3 1plf-a1-m1-cB_1plf-a1-m1-cD
67 7ahh-a1-m1-cD 382 17 0.1029 0.0183 0.4118 8.0 7ahh-a1-m1-cC_7ahh-a1-m1-cD
68 7ahh-a1-m1-cC 382 17 0.1029 0.0183 0.4118 8.0 7ahh-a1-m1-cC_7ahh-a1-m1-cD
69 1tvx-a1-m1-cC 64 56 0.1765 0.1875 0.2143 9.9 1tvx-a1-m1-cA_1tvx-a1-m1-cC, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
70 1tvx-a1-m1-cA 64 56 0.1765 0.1875 0.2143 9.9 1tvx-a1-m1-cA_1tvx-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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