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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
VPAFLGNLWALVGDPGTDHLIRWSPSGTSFLVSDQSRFAKEVLPQYFKHSNMASFVRQLN
MYGFRKVVSIEDHVEFQHPSFVRGREQLLERVRR

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6j6w-a1-m2-cB 94 94 1.0000 1.0000 1.0000 1.23e-66 6j6w-a1-m1-cA_6j6w-a1-m2-cB, 6j6w-a1-m2-cA_6j6w-a1-m2-cB
2 6j6w-a1-m2-cA 94 94 1.0000 1.0000 1.0000 1.23e-66 6j6w-a1-m2-cA_6j6w-a1-m2-cB
3 6j6w-a1-m1-cA 94 94 1.0000 1.0000 1.0000 1.23e-66 6j6w-a1-m1-cA_6j6w-a1-m2-cB
4 5hdg-a2-m2-cA 94 94 0.7553 0.7553 0.7553 6.39e-48 5hdg-a2-m1-cA_5hdg-a2-m2-cA
5 5hdg-a2-m1-cA 94 94 0.7553 0.7553 0.7553 6.39e-48 5hdg-a2-m1-cA_5hdg-a2-m2-cA
6 5d5u-a1-m2-cB 100 96 0.7553 0.7100 0.7396 1.31e-47 5d5u-a1-m1-cB_5d5u-a1-m2-cB
7 5d5u-a1-m1-cB 100 96 0.7553 0.7100 0.7396 1.31e-47 5d5u-a1-m1-cB_5d5u-a1-m2-cB
8 7dcs-a2-m1-cE 105 103 0.7553 0.6762 0.6893 2.83e-46 7dcs-a2-m1-cF_7dcs-a2-m1-cE
9 7dcs-a2-m1-cF 93 94 0.7234 0.7312 0.7234 5.23e-45 7dcs-a2-m1-cF_7dcs-a2-m1-cE
10 5d8l-a2-m1-cF 98 95 0.6489 0.6224 0.6421 1.82e-40 5d8l-a2-m1-cF_5d8l-a2-m1-cH
11 7dcu-a1-m1-cC 92 94 0.6383 0.6522 0.6383 3.33e-39 7dcu-a1-m1-cC_7dcu-a1-m1-cB
12 7dcu-a1-m1-cB 102 99 0.6489 0.5980 0.6162 3.36e-39 7dcu-a1-m1-cC_7dcu-a1-m1-cB
13 5d8l-a2-m1-cH 106 103 0.6383 0.5660 0.5825 3.70e-38 5d8l-a2-m1-cF_5d8l-a2-m1-cH
14 3hts-a1-m2-cB 82 77 0.4362 0.5000 0.5325 3.58e-26 3hts-a1-m1-cB_3hts-a1-m2-cB
15 3hts-a1-m1-cB 82 77 0.4362 0.5000 0.5325 3.58e-26 3hts-a1-m1-cB_3hts-a1-m2-cB
16 1fbs-a1-m1-cA 87 70 0.4043 0.4368 0.5429 5.18e-24 1fbs-a1-m1-cA_1fbs-a1-m1-cB
17 1fbs-a1-m1-cB 90 70 0.4043 0.4222 0.5429 5.44e-24 1fbs-a1-m1-cA_1fbs-a1-m1-cB
18 5d5x-a1-m1-cB 99 96 0.4468 0.4242 0.4375 2.85e-23 5d5x-a1-m1-cE_5d5x-a1-m1-cB
19 5d5x-a1-m1-cE 98 95 0.4468 0.4286 0.4421 5.58e-23 5d5x-a1-m1-cE_5d5x-a1-m1-cB
20 5zfq-a1-m3-cB 360 32 0.1064 0.0278 0.3125 1.5 5zfq-a1-m3-cA_5zfq-a1-m3-cB
21 5zfq-a1-m3-cA 360 32 0.1064 0.0278 0.3125 1.5 5zfq-a1-m3-cA_5zfq-a1-m3-cB
22 3jvv-a1-m2-cC 337 33 0.1170 0.0326 0.3333 1.9 3jvv-a1-m1-cA_3jvv-a1-m2-cC
23 3jvv-a1-m1-cA 331 33 0.1170 0.0332 0.3333 2.0 3jvv-a1-m1-cA_3jvv-a1-m2-cC
24 4mgz-a2-m2-cE 632 43 0.1277 0.0190 0.2791 2.5 4mgz-a2-m1-cE_4mgz-a2-m2-cE
25 4mgz-a2-m1-cE 632 43 0.1277 0.0190 0.2791 2.5 4mgz-a2-m1-cE_4mgz-a2-m2-cE
26 7nfc-a1-m1-cF 3557 54 0.2021 0.0053 0.3519 4.0 7nfc-a1-m1-cF_7nfc-a1-m1-cA
27 7nfc-a1-m1-cA 3562 54 0.2021 0.0053 0.3519 4.0 7nfc-a1-m1-cF_7nfc-a1-m1-cA
28 3wjm-a1-m1-cC 668 25 0.1277 0.0180 0.4800 5.3 3wjm-a1-m1-cB_3wjm-a1-m1-cC
29 3wjm-a1-m1-cB 668 25 0.1277 0.0180 0.4800 5.3 3wjm-a1-m1-cB_3wjm-a1-m1-cC, 3wjm-a1-m1-cB_3wjm-a1-m1-cD
30 3wjm-a1-m1-cD 672 25 0.1277 0.0179 0.4800 5.3 3wjm-a1-m1-cB_3wjm-a1-m1-cD
31 4uuv-a2-m1-cG 95 31 0.1064 0.1053 0.3226 7.7 4uuv-a2-m1-cD_4uuv-a2-m1-cG
32 4uuv-a2-m1-cD 95 31 0.1064 0.1053 0.3226 7.7 4uuv-a2-m1-cD_4uuv-a2-m1-cG
33 6lgx-a1-m2-cB 348 36 0.1489 0.0402 0.3889 9.2 6lgx-a1-m2-cB_6lgx-a1-m1-cA
34 6jjj-a1-m1-cF 151 46 0.1489 0.0927 0.3043 10.0 6jjj-a1-m1-cB_6jjj-a1-m1-cF, 6jjj-a1-m1-cD_6jjj-a1-m1-cF
35 6jjj-a1-m1-cD 151 46 0.1489 0.0927 0.3043 10.0 6jjj-a1-m1-cD_6jjj-a1-m1-cF
36 6jjj-a1-m1-cB 151 46 0.1489 0.0927 0.3043 10.0 6jjj-a1-m1-cB_6jjj-a1-m1-cF

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Reference:
Jacob Schwartz et al.

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