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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
VPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLN
MYGFRKVVPVEFQHPYFKQGQDDLLENIKRKV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7dcu-a1-m1-cC 92 92 1.0000 1.0000 1.0000 1.27e-65 7dcu-a1-m1-cC_7dcu-a1-m1-cB
2 5d8l-a2-m1-cF 98 97 0.9891 0.9286 0.9381 1.41e-62 5d8l-a2-m1-cF_5d8l-a2-m1-cH
3 7dcu-a1-m1-cB 102 101 1.0000 0.9020 0.9109 1.42e-62 7dcu-a1-m1-cC_7dcu-a1-m1-cB
4 5d8l-a2-m1-cH 106 105 0.9891 0.8585 0.8667 2.10e-61 5d8l-a2-m1-cF_5d8l-a2-m1-cH
5 7dcs-a2-m1-cF 93 93 0.7283 0.7204 0.7204 7.17e-44 7dcs-a2-m1-cF_7dcs-a2-m1-cE
6 5d5u-a1-m2-cB 100 98 0.7283 0.6700 0.6837 2.37e-43 5d5u-a1-m1-cB_5d5u-a1-m2-cB
7 5d5u-a1-m1-cB 100 98 0.7283 0.6700 0.6837 2.37e-43 5d5u-a1-m1-cB_5d5u-a1-m2-cB
8 5hdg-a2-m2-cA 94 93 0.7065 0.6915 0.6989 1.76e-42 5hdg-a2-m1-cA_5hdg-a2-m2-cA
9 5hdg-a2-m1-cA 94 93 0.7065 0.6915 0.6989 1.76e-42 5hdg-a2-m1-cA_5hdg-a2-m2-cA
10 7dcs-a2-m1-cE 105 105 0.7283 0.6381 0.6381 3.22e-42 7dcs-a2-m1-cF_7dcs-a2-m1-cE
11 6j6w-a1-m2-cB 94 94 0.6522 0.6383 0.6383 3.26e-39 6j6w-a1-m1-cA_6j6w-a1-m2-cB, 6j6w-a1-m2-cA_6j6w-a1-m2-cB
12 6j6w-a1-m2-cA 94 94 0.6522 0.6383 0.6383 3.26e-39 6j6w-a1-m2-cA_6j6w-a1-m2-cB
13 6j6w-a1-m1-cA 94 94 0.6522 0.6383 0.6383 3.26e-39 6j6w-a1-m1-cA_6j6w-a1-m2-cB
14 5d5x-a1-m1-cE 98 96 0.4891 0.4592 0.4688 1.23e-24 5d5x-a1-m1-cE_5d5x-a1-m1-cB
15 3hts-a1-m2-cB 82 66 0.4130 0.4634 0.5758 1.33e-24 3hts-a1-m1-cB_3hts-a1-m2-cB
16 3hts-a1-m1-cB 82 66 0.4130 0.4634 0.5758 1.33e-24 3hts-a1-m1-cB_3hts-a1-m2-cB
17 5d5x-a1-m1-cB 99 97 0.4783 0.4444 0.4536 2.02e-24 5d5x-a1-m1-cE_5d5x-a1-m1-cB
18 1fbs-a1-m1-cA 87 70 0.4130 0.4368 0.5429 1.10e-23 1fbs-a1-m1-cA_1fbs-a1-m1-cB
19 1fbs-a1-m1-cB 90 70 0.4130 0.4222 0.5429 1.12e-23 1fbs-a1-m1-cA_1fbs-a1-m1-cB
20 4g8a-a1-m1-cA 601 61 0.1957 0.0300 0.2951 1.8 4g8a-a1-m1-cA_4g8a-a1-m1-cB
21 4g8a-a1-m1-cB 605 61 0.1957 0.0298 0.2951 1.9 4g8a-a1-m1-cA_4g8a-a1-m1-cB
22 2y6p-a2-m2-cC 229 53 0.1848 0.0742 0.3208 4.4 2y6p-a2-m1-cC_2y6p-a2-m2-cC
23 2y6p-a2-m1-cC 229 53 0.1848 0.0742 0.3208 4.4 2y6p-a2-m1-cC_2y6p-a2-m2-cC
24 2pgs-a1-m6-cA 382 30 0.1087 0.0262 0.3333 5.3 2pgs-a1-m2-cA_2pgs-a1-m6-cA, 2pgs-a1-m5-cA_2pgs-a1-m6-cA
25 2pgs-a1-m5-cA 382 30 0.1087 0.0262 0.3333 5.3 2pgs-a1-m5-cA_2pgs-a1-m6-cA
26 2pgs-a1-m2-cA 382 30 0.1087 0.0262 0.3333 5.3 2pgs-a1-m2-cA_2pgs-a1-m6-cA

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Reference:
Jacob Schwartz et al.

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