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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
VPAFLTKLWTLVSDPDTDALICWSPSGNSFHVFDQGQFAKEVLPKYFKHNNMASFVRQLN
MYGFRKVVHDTEFQHPCFLRGQEQLLENIKRKV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7dcs-a2-m1-cF 93 93 1.0000 1.0000 1.0000 6.63e-68 7dcs-a2-m1-cF_7dcs-a2-m1-cE
2 5d5u-a1-m2-cB 100 98 1.0000 0.9300 0.9490 1.41e-65 5d5u-a1-m1-cB_5d5u-a1-m2-cB
3 5d5u-a1-m1-cB 100 98 1.0000 0.9300 0.9490 1.41e-65 5d5u-a1-m1-cB_5d5u-a1-m2-cB
4 5hdg-a2-m2-cA 94 93 0.9785 0.9681 0.9785 1.65e-64 5hdg-a2-m1-cA_5hdg-a2-m2-cA
5 5hdg-a2-m1-cA 94 93 0.9785 0.9681 0.9785 1.65e-64 5hdg-a2-m1-cA_5hdg-a2-m2-cA
6 7dcs-a2-m1-cE 105 105 1.0000 0.8857 0.8857 2.54e-64 7dcs-a2-m1-cF_7dcs-a2-m1-cE
7 6j6w-a1-m2-cB 94 94 0.7312 0.7234 0.7234 5.17e-45 6j6w-a1-m1-cA_6j6w-a1-m2-cB, 6j6w-a1-m2-cA_6j6w-a1-m2-cB
8 6j6w-a1-m2-cA 94 94 0.7312 0.7234 0.7234 5.17e-45 6j6w-a1-m2-cA_6j6w-a1-m2-cB
9 6j6w-a1-m1-cA 94 94 0.7312 0.7234 0.7234 5.17e-45 6j6w-a1-m1-cA_6j6w-a1-m2-cB
10 7dcu-a1-m1-cC 92 93 0.7204 0.7283 0.7204 7.24e-44 7dcu-a1-m1-cC_7dcu-a1-m1-cB
11 7dcu-a1-m1-cB 102 101 0.7312 0.6667 0.6733 8.77e-44 7dcu-a1-m1-cC_7dcu-a1-m1-cB
12 5d8l-a2-m1-cF 98 97 0.7204 0.6837 0.6907 9.16e-44 5d8l-a2-m1-cF_5d8l-a2-m1-cH
13 5d8l-a2-m1-cH 106 105 0.7204 0.6321 0.6381 1.26e-42 5d8l-a2-m1-cF_5d8l-a2-m1-cH
14 5d5x-a1-m1-cE 98 96 0.4624 0.4388 0.4479 1.32e-24 5d5x-a1-m1-cE_5d5x-a1-m1-cB
15 5d5x-a1-m1-cB 99 97 0.4624 0.4343 0.4433 4.01e-24 5d5x-a1-m1-cE_5d5x-a1-m1-cB
16 3hts-a1-m2-cB 82 66 0.4194 0.4756 0.5909 1.46e-23 3hts-a1-m1-cB_3hts-a1-m2-cB
17 3hts-a1-m1-cB 82 66 0.4194 0.4756 0.5909 1.46e-23 3hts-a1-m1-cB_3hts-a1-m2-cB
18 1fbs-a1-m1-cB 90 66 0.4086 0.4222 0.5758 2.18e-22 1fbs-a1-m1-cA_1fbs-a1-m1-cB
19 1fbs-a1-m1-cA 87 66 0.4086 0.4368 0.5758 2.45e-22 1fbs-a1-m1-cA_1fbs-a1-m1-cB
20 6lsu-a2-m2-cA 676 36 0.1398 0.0192 0.3611 3.8 6lsu-a2-m1-cA_6lsu-a2-m2-cA
21 6lsu-a2-m1-cA 676 36 0.1398 0.0192 0.3611 3.8 6lsu-a2-m1-cA_6lsu-a2-m2-cA
22 5yz0-a1-m1-cB 2362 34 0.1398 0.0055 0.3824 7.4 5yz0-a1-m1-cA_5yz0-a1-m1-cB
23 5yz0-a1-m1-cA 2362 34 0.1398 0.0055 0.3824 7.4 5yz0-a1-m1-cA_5yz0-a1-m1-cB
24 7ldg-a1-m2-cC 208 17 0.0968 0.0433 0.5294 9.7 7ldg-a1-m2-cC_7ldg-a1-m2-cA
25 7ldg-a1-m2-cA 215 17 0.0968 0.0419 0.5294 9.9 7ldg-a1-m1-cA_7ldg-a1-m2-cA, 7ldg-a1-m2-cC_7ldg-a1-m2-cA
26 7ldg-a1-m1-cA 215 17 0.0968 0.0419 0.5294 9.9 7ldg-a1-m1-cA_7ldg-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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