HomodimerDB

Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

HomodimerDB

>protein (length=99)
VPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPDWQNYTPGPGV
RYPLTFGWCYKLVPEVLEWRFDSRLAFHHVARELHPEYF

#	Hit	Hit length	Aligned length	Identity (normalized by query)	Identity (normalized by hit)	Identity (normalized by aligned length)	E-value	Dimers
1	1avv-a1-m2-cA	99	99	1.0000	1.0000	1.0000	1.36e-71	1avv-a1-m1-cA_1avv-a1-m2-cA
2	1avv-a1-m1-cA	99	99	1.0000	1.0000	1.0000	1.36e-71	1avv-a1-m1-cA_1avv-a1-m2-cA
3	1efn-a1-m1-cD	104	101	1.0000	0.9519	0.9802	1.65e-69	1efn-a1-m1-cB_1efn-a1-m1-cD
4	1efn-a1-m1-cB	104	101	1.0000	0.9519	0.9802	1.65e-69	1efn-a1-m1-cB_1efn-a1-m1-cD
5	6b72-a2-m1-cE	119	100	0.8990	0.7479	0.8900	1.07e-63	6b72-a2-m1-cE_6b72-a2-m1-cC
6	6b72-a2-m1-cC	122	103	0.8990	0.7295	0.8641	2.94e-63	6b72-a2-m1-cE_6b72-a2-m1-cC
7	4u5w-a1-m1-cC	111	103	0.8990	0.8018	0.8641	3.35e-63	4u5w-a1-m1-cC_4u5w-a1-m1-cA
8	4u5w-a1-m1-cA	116	109	0.8990	0.7672	0.8165	1.52e-62	4u5w-a1-m1-cC_4u5w-a1-m1-cA
9	3ik5-a1-m1-cC	117	110	0.5960	0.5043	0.5364	9.06e-37	3ik5-a1-m1-cC_3ik5-a1-m1-cA
10	3ik5-a1-m1-cA	119	112	0.5960	0.4958	0.5268	2.21e-36	3ik5-a1-m1-cC_3ik5-a1-m1-cA
11	5nui-a1-m1-cA	108	108	0.5859	0.5370	0.5370	3.01e-36	5nui-a1-m1-cA_5nui-a1-m1-cB
12	5nui-a1-m1-cB	130	128	0.5960	0.4538	0.4609	7.80e-34	5nui-a1-m1-cA_5nui-a1-m1-cB
13	3d1l-a1-m1-cA	250	66	0.2020	0.0800	0.3030	0.067	3d1l-a1-m1-cA_3d1l-a1-m1-cB
14	3d1l-a1-m1-cB	252	69	0.2020	0.0794	0.2899	0.17	3d1l-a1-m1-cA_3d1l-a1-m1-cB
15	5h6b-a2-m2-cA	252	44	0.1616	0.0635	0.3636	2.7	5h6b-a2-m1-cA_5h6b-a2-m2-cA
16	5h6b-a2-m1-cA	252	44	0.1616	0.0635	0.3636	2.7	5h6b-a2-m1-cA_5h6b-a2-m2-cA
17	7ueh-a4-m1-cF	386	38	0.1414	0.0363	0.3684	3.2	7ueh-a4-m1-cF_7ueh-a4-m1-cH
18	7ueh-a3-m1-cB	472	38	0.1414	0.0297	0.3684	3.2	7ueh-a3-m1-cC_7ueh-a3-m1-cB
19	7ueh-a4-m1-cH	473	38	0.1414	0.0296	0.3684	3.2	7ueh-a4-m1-cF_7ueh-a4-m1-cH
20	3hin-a4-m3-cB	251	24	0.1212	0.0478	0.5000	4.7	3hin-a4-m2-cB_3hin-a4-m3-cB
21	3hin-a4-m2-cB	251	24	0.1212	0.0478	0.5000	4.7	3hin-a4-m2-cB_3hin-a4-m3-cB
22	3hin-a2-m3-cB	251	24	0.1212	0.0478	0.5000	4.7	3hin-a2-m3-cB_3hin-a2-m1-cA, 3hin-a2-m3-cB_3hin-a2-m2-cA
23	3hin-a2-m2-cA	258	24	0.1212	0.0465	0.5000	4.8	3hin-a2-m3-cB_3hin-a2-m2-cA
24	3hin-a2-m1-cA	258	24	0.1212	0.0465	0.5000	4.8	3hin-a2-m3-cB_3hin-a2-m1-cA

[Back]

Reference:
Jacob Schwartz et al.