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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
VPRLLTASERERLEPFIDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRI
LQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKREKD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1sce-a2-m2-cC 111 97 1.0000 0.8739 1.0000 5.31e-69 1sce-a2-m1-cA_1sce-a2-m2-cC, 1sce-a2-m1-cB_1sce-a2-m2-cC
2 1sce-a1-m1-cC 111 97 1.0000 0.8739 1.0000 5.31e-69 1sce-a1-m1-cA_1sce-a1-m1-cC
3 1sce-a2-m1-cD 103 97 1.0000 0.9417 1.0000 1.19e-68 1sce-a2-m1-cB_1sce-a2-m1-cD
4 1sce-a2-m1-cB 97 97 1.0000 1.0000 1.0000 1.62e-68 1sce-a2-m1-cA_1sce-a2-m1-cB, 1sce-a2-m1-cB_1sce-a2-m1-cD, 1sce-a2-m1-cB_1sce-a2-m2-cC
5 1sce-a2-m1-cA 97 97 1.0000 1.0000 1.0000 1.62e-68 1sce-a2-m1-cA_1sce-a2-m1-cB, 1sce-a2-m1-cA_1sce-a2-m2-cC
6 1sce-a1-m1-cA 97 97 1.0000 1.0000 1.0000 1.62e-68 1sce-a1-m1-cA_1sce-a1-m1-cC
7 4lpa-a5-m2-cD 112 92 0.7423 0.6429 0.7826 1.66e-49 4lpa-a5-m1-cA_4lpa-a5-m2-cD, 4lpa-a5-m1-cB_4lpa-a5-m2-cD
8 4lpa-a5-m1-cB 112 92 0.7423 0.6429 0.7826 1.66e-49 4lpa-a5-m1-cB_4lpa-a5-m2-cD
9 4lpa-a5-m1-cA 112 92 0.7423 0.6429 0.7826 1.66e-49 4lpa-a5-m1-cA_4lpa-a5-m2-cD
10 1qb3-a5-m3-cB 119 92 0.7423 0.6050 0.7826 1.75e-49 1qb3-a5-m1-cB_1qb3-a5-m3-cB
11 1qb3-a5-m1-cB 119 92 0.7423 0.6050 0.7826 1.75e-49 1qb3-a5-m1-cB_1qb3-a5-m3-cB
12 3qy2-a4-m2-cB 105 92 0.7320 0.6762 0.7717 5.96e-49 3qy2-a4-m1-cB_3qy2-a4-m2-cB
13 3qy2-a4-m1-cB 105 92 0.7320 0.6762 0.7717 5.96e-49 3qy2-a4-m1-cB_3qy2-a4-m2-cB
14 1dkt-a1-m1-cA 72 76 0.4021 0.5417 0.5132 5.09e-22 1dkt-a1-m1-cB_1dkt-a1-m1-cA
15 1dkt-a1-m1-cB 71 76 0.4021 0.5493 0.5132 6.04e-22 1dkt-a1-m1-cB_1dkt-a1-m1-cA
16 3kcw-a1-m2-cA 110 78 0.2165 0.1909 0.2692 6.7 3kcw-a1-m1-cA_3kcw-a1-m2-cA
17 3kcw-a1-m1-cA 110 78 0.2165 0.1909 0.2692 6.7 3kcw-a1-m1-cA_3kcw-a1-m2-cA
18 7wdm-a1-m4-cA 113 78 0.2165 0.1858 0.2692 6.9 7wdm-a1-m1-cA_7wdm-a1-m4-cA, 7wdm-a1-m3-cA_7wdm-a1-m4-cA
19 7wdm-a1-m3-cA 113 78 0.2165 0.1858 0.2692 6.9 7wdm-a1-m3-cA_7wdm-a1-m4-cA
20 7wdm-a1-m1-cA 113 78 0.2165 0.1858 0.2692 6.9 7wdm-a1-m1-cA_7wdm-a1-m4-cA
21 2pgd-a1-m2-cA 473 23 0.1134 0.0233 0.4783 6.9 2pgd-a1-m1-cA_2pgd-a1-m2-cA
22 2pgd-a1-m1-cA 473 23 0.1134 0.0233 0.4783 6.9 2pgd-a1-m1-cA_2pgd-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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