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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=96)
VRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFG
VNVVESYVSYLRRKIDTGEKRLLHTLRGVGYVLREP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2pmu-a1-m1-cD 96 96 1.0000 1.0000 1.0000 6.87e-67 2pmu-a1-m1-cC_2pmu-a1-m1-cD
2 5ed4-a2-m1-cF 214 98 1.0000 0.4486 0.9796 2.15e-64 5ed4-a2-m1-cF_5ed4-a2-m1-cE
3 5ed4-a2-m1-cE 224 98 1.0000 0.4286 0.9796 2.31e-64 5ed4-a2-m1-cF_5ed4-a2-m1-cE
4 3r0j-a1-m1-cA 221 98 1.0000 0.4344 0.9796 3.15e-64 3r0j-a1-m1-cB_3r0j-a1-m1-cA
5 3r0j-a1-m1-cB 218 97 0.9896 0.4358 0.9794 1.01e-63 3r0j-a1-m1-cB_3r0j-a1-m1-cA
6 2pmu-a1-m1-cC 92 96 0.9479 0.9891 0.9479 3.96e-60 2pmu-a1-m1-cC_2pmu-a1-m1-cD
7 1ys7-a1-m1-cB 226 94 0.4167 0.1770 0.4255 1.08e-17 1ys7-a1-m1-cA_1ys7-a1-m1-cB
8 1ys7-a1-m1-cA 224 93 0.4167 0.1786 0.4301 2.54e-16 1ys7-a1-m1-cA_1ys7-a1-m1-cB
9 6kyx-a1-m2-cA 100 90 0.3542 0.3400 0.3778 2.11e-14 6kyx-a1-m1-cA_6kyx-a1-m2-cA
10 6kyx-a1-m1-cA 100 90 0.3542 0.3400 0.3778 2.11e-14 6kyx-a1-m1-cA_6kyx-a1-m2-cA
11 7e1f-a1-m1-cB 93 90 0.3646 0.3763 0.3889 6.75e-14 7e1f-a1-m1-cB_7e1f-a1-m1-cA
12 7e1f-a1-m1-cA 95 90 0.3646 0.3684 0.3889 7.40e-14 7e1f-a1-m1-cB_7e1f-a1-m1-cA
13 5u8m-a1-m1-cB 229 95 0.3333 0.1397 0.3368 8.00e-14 5u8m-a1-m1-cA_5u8m-a1-m1-cB
14 5u8m-a1-m1-cA 229 95 0.3333 0.1397 0.3368 8.00e-14 5u8m-a1-m1-cA_5u8m-a1-m1-cB
15 7e1b-a2-m1-cH 208 88 0.3646 0.1683 0.3977 2.67e-13 7e1b-a2-m1-cF_7e1b-a2-m1-cH, 7e1b-a2-m1-cH_7e1b-a2-m1-cE
16 7e1b-a2-m1-cF 208 88 0.3646 0.1683 0.3977 2.67e-13 7e1b-a2-m1-cF_7e1b-a2-m1-cH
17 7e1b-a1-m1-cD 208 88 0.3646 0.1683 0.3977 2.81e-13 7e1b-a1-m1-cD_7e1b-a1-m1-cC
18 7e1b-a1-m1-cC 209 88 0.3646 0.1675 0.3977 3.07e-13 7e1b-a1-m1-cD_7e1b-a1-m1-cC
19 7e1b-a2-m1-cE 209 88 0.3646 0.1675 0.3977 3.26e-13 7e1b-a2-m1-cH_7e1b-a2-m1-cE
20 3q9v-a1-m1-cA 98 95 0.3750 0.3673 0.3789 2.13e-12 3q9v-a1-m1-cA_3q9v-a1-m2-cB
21 3q9v-a1-m2-cB 99 95 0.3750 0.3636 0.3789 2.32e-12 3q9v-a1-m1-cA_3q9v-a1-m2-cB
22 5x5l-a1-m1-cA 95 93 0.2917 0.2947 0.3011 8.49e-11 5x5l-a1-m1-cA_5x5l-a1-m1-cE
23 2oqr-a1-m2-cA 226 90 0.3229 0.1372 0.3444 6.11e-10 2oqr-a1-m1-cA_2oqr-a1-m2-cA
24 2oqr-a1-m1-cA 226 90 0.3229 0.1372 0.3444 6.11e-10 2oqr-a1-m1-cA_2oqr-a1-m2-cA
25 4kfc-a1-m1-cB 224 95 0.3333 0.1429 0.3368 2.13e-09 4kfc-a1-m1-cA_4kfc-a1-m1-cB
26 4kfc-a1-m1-cA 223 95 0.3333 0.1435 0.3368 2.27e-09 4kfc-a1-m1-cA_4kfc-a1-m1-cB
27 5dcm-a1-m1-cA 97 96 0.3333 0.3299 0.3333 1.86e-08 5dcm-a1-m1-cA_5dcm-a1-m1-cB
28 5x5l-a1-m1-cE 98 93 0.2812 0.2755 0.2903 1.97e-08 5x5l-a1-m1-cA_5x5l-a1-m1-cE
29 5za3-a1-m1-cA 101 96 0.3125 0.2970 0.3125 5.32e-08 5za3-a1-m1-cB_5za3-a1-m1-cA
30 5za3-a1-m1-cB 100 96 0.3125 0.3000 0.3125 5.68e-08 5za3-a1-m1-cB_5za3-a1-m1-cA
31 5dcm-a1-m1-cB 98 94 0.3229 0.3163 0.3298 5.46e-07 5dcm-a1-m1-cA_5dcm-a1-m1-cB
32 4b09-a1-m1-cA 216 87 0.2708 0.1204 0.2989 3.40e-06 4b09-a1-m1-cB_4b09-a1-m1-cA
33 4b09-a1-m1-cB 214 93 0.2812 0.1262 0.2903 3.58e-06 4b09-a1-m1-cB_4b09-a1-m1-cA
34 4s04-a2-m1-cF 219 93 0.2604 0.1142 0.2688 4.38e-05 4s04-a2-m1-cE_4s04-a2-m1-cF
35 4s04-a2-m1-cE 219 93 0.2604 0.1142 0.2688 4.38e-05 4s04-a2-m1-cE_4s04-a2-m1-cF
36 7dag-a1-m1-cG 419 61 0.1875 0.0430 0.2951 1.4 7dag-a1-m1-cG_7dag-a1-m1-cF
37 7dag-a1-m1-cF 867 61 0.1875 0.0208 0.2951 1.4 7dag-a1-m1-cE_7dag-a1-m1-cF, 7dag-a1-m1-cG_7dag-a1-m1-cF
38 7dag-a1-m1-cE 867 61 0.1875 0.0208 0.2951 1.4 7dag-a1-m1-cE_7dag-a1-m1-cF
39 2hls-a3-m4-cA 232 75 0.2188 0.0905 0.2800 5.6 2hls-a3-m4-cB_2hls-a3-m4-cA
40 2hls-a3-m1-cA 232 75 0.2188 0.0905 0.2800 5.6 2hls-a3-m4-cB_2hls-a3-m1-cA
41 2hls-a3-m4-cB 229 59 0.1667 0.0699 0.2712 7.1 2hls-a3-m4-cB_2hls-a3-m1-cA, 2hls-a3-m4-cB_2hls-a3-m4-cA

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Reference:
Jacob Schwartz et al.

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