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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=80)
VRQFETHDVILPQCYIVVKFEFSKFYEFVLKYKNDIILKSSTTLFNRRKDKLALFFTSNC
VAYPNLQTIKDYLSWRYVDT

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5xox-a2-m2-cF 80 80 1.0000 1.0000 1.0000 6.76e-55 5xox-a2-m1-cF_5xox-a2-m2-cF
2 5xox-a2-m1-cF 80 80 1.0000 1.0000 1.0000 6.76e-55 5xox-a2-m1-cF_5xox-a2-m2-cF
3 5xox-a2-m2-cE 229 146 0.9625 0.3362 0.5274 4.19e-33 5xox-a2-m1-cE_5xox-a2-m2-cE
4 5xox-a2-m1-cE 229 146 0.9625 0.3362 0.5274 4.19e-33 5xox-a2-m1-cE_5xox-a2-m2-cE
5 5xox-a1-m1-cD 229 146 0.9625 0.3362 0.5274 4.19e-33 5xox-a1-m1-cA_5xox-a1-m1-cD
6 5xox-a1-m1-cA 229 146 0.9625 0.3362 0.5274 4.19e-33 5xox-a1-m1-cA_5xox-a1-m1-cD
7 3ote-a1-m2-cA 240 142 0.4250 0.1417 0.2394 8.94e-05 3ote-a1-m1-cA_3ote-a1-m2-cA
8 3ote-a1-m1-cA 240 142 0.4250 0.1417 0.2394 8.94e-05 3ote-a1-m1-cA_3ote-a1-m2-cA
9 3otd-a1-m2-cB 240 142 0.4250 0.1417 0.2394 8.94e-05 3otd-a1-m1-cA_3otd-a1-m2-cB
10 3otd-a1-m1-cA 240 142 0.4250 0.1417 0.2394 8.94e-05 3otd-a1-m1-cA_3otd-a1-m2-cB
11 3otb-a1-m2-cB 237 142 0.4250 0.1435 0.2394 9.93e-05 3otb-a1-m2-cA_3otb-a1-m2-cB
12 3otb-a1-m2-cA 237 142 0.4250 0.1435 0.2394 9.93e-05 3otb-a1-m2-cA_3otb-a1-m2-cB
13 3wc0-a9-m1-cI 242 144 0.4125 0.1364 0.2292 0.003 3wc0-a9-m1-cI_3wc0-a9-m1-cJ
14 3wc0-a3-m1-cL 242 144 0.4125 0.1364 0.2292 0.003 3wc0-a3-m1-cI_3wc0-a3-m1-cL
15 3wc0-a3-m1-cI 242 144 0.4125 0.1364 0.2292 0.003 3wc0-a3-m1-cI_3wc0-a3-m1-cL
16 3wc0-a9-m1-cJ 265 144 0.4125 0.1245 0.2292 0.003 3wc0-a9-m1-cI_3wc0-a9-m1-cJ
17 3wc0-a4-m1-cO 265 144 0.4125 0.1245 0.2292 0.003 3wc0-a4-m1-cM_3wc0-a4-m1-cO
18 3wc0-a4-m1-cM 265 144 0.4125 0.1245 0.2292 0.003 3wc0-a4-m1-cM_3wc0-a4-m1-cO
19 6fnd-a2-m1-cD 408 39 0.1750 0.0343 0.3590 3.4 6fnd-a2-m1-cD_6fnd-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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