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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
VSDVPRDIEVVAVTPTSALISWDAPAVTIRYIRLTYGETGGNSPVQEITLPGSKSTYTIS
GLKPGTDYTVTLYSVTGRGPASSKPASINFRTEI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2ck2-a1-m1-cA 94 94 1.0000 1.0000 1.0000 1.40e-62 2ck2-a1-m1-cA_2ck2-a1-m1-cB
2 2ck2-a1-m1-cB 96 96 1.0000 0.9792 0.9792 1.32e-60 2ck2-a1-m1-cA_2ck2-a1-m1-cB
3 6bqo-a2-m2-cC 95 99 0.6064 0.6000 0.5758 3.04e-29 6bqo-a2-m1-cC_6bqo-a2-m2-cC
4 6bqo-a2-m1-cC 95 99 0.6064 0.6000 0.5758 3.04e-29 6bqo-a2-m1-cC_6bqo-a2-m2-cC
5 2rbl-a1-m1-cB 89 90 0.3830 0.4045 0.4000 5.24e-12 2rbl-a1-m1-cA_2rbl-a1-m1-cB
6 2rbl-a1-m1-cA 89 90 0.3830 0.4045 0.4000 5.24e-12 2rbl-a1-m1-cA_2rbl-a1-m1-cB
7 4lpu-a1-m1-cB 93 88 0.3511 0.3548 0.3750 1.34e-11 4lpu-a1-m1-cA_4lpu-a1-m1-cB
8 4lpu-a1-m1-cA 93 88 0.3511 0.3548 0.3750 1.34e-11 4lpu-a1-m1-cA_4lpu-a1-m1-cB
9 5j7k-a2-m1-cB 90 72 0.3085 0.3222 0.4028 3.77e-07 5j7k-a2-m1-cF_5j7k-a2-m1-cB
10 5j7k-a2-m1-cG 85 78 0.3298 0.3647 0.3974 4.54e-07 5j7k-a2-m1-cD_5j7k-a2-m1-cG
11 5j7k-a1-m1-cA 84 84 0.3191 0.3571 0.3571 6.84e-07 5j7k-a1-m1-cC_5j7k-a1-m1-cA
12 5j7k-a2-m1-cF 79 71 0.2979 0.3544 0.3944 7.08e-07 5j7k-a2-m1-cF_5j7k-a2-m1-cB
13 3b83-a1-m8-cG 99 88 0.2872 0.2727 0.3068 1.99e-06 3b83-a1-m2-cA_3b83-a1-m8-cG, 3b83-a1-m2-cE_3b83-a1-m8-cG
14 3b83-a1-m4-cE 99 88 0.2872 0.2727 0.3068 1.99e-06 3b83-a1-m1-cC_3b83-a1-m4-cE, 3b83-a1-m4-cC_3b83-a1-m4-cE, 3b83-a1-m4-cF_3b83-a1-m4-cE
15 3b83-a1-m4-cC 99 88 0.2872 0.2727 0.3068 1.99e-06 3b83-a1-m4-cC_3b83-a1-m4-cE
16 3b83-a1-m2-cE 99 88 0.2872 0.2727 0.3068 1.99e-06 3b83-a1-m2-cE_3b83-a1-m8-cG
17 3b83-a1-m1-cC 99 88 0.2872 0.2727 0.3068 1.99e-06 3b83-a1-m1-cC_3b83-a1-m4-cE
18 3b83-a1-m2-cA 95 88 0.2872 0.2842 0.3068 2.31e-06 3b83-a1-m2-cA_3b83-a1-m8-cG, 3b83-a1-m8-cB_3b83-a1-m2-cA
19 3b83-a5-m1-cD 91 88 0.2872 0.2967 0.3068 2.35e-06 3b83-a5-m1-cD_3b83-a5-m1-cH
20 3b83-a1-m8-cD 91 88 0.2872 0.2967 0.3068 2.35e-06 3b83-a1-m8-cD_3b83-a1-m8-cB
21 3b83-a1-m5-cD 91 88 0.2872 0.2967 0.3068 2.35e-06 3b83-a1-m5-cD_3b83-a1-m8-cH
22 3b83-a5-m1-cH 94 88 0.2872 0.2872 0.3068 2.37e-06 3b83-a5-m1-cD_3b83-a5-m1-cH
23 3b83-a1-m8-cH 94 88 0.2872 0.2872 0.3068 2.37e-06 3b83-a1-m5-cD_3b83-a1-m8-cH
24 3b83-a1-m8-cB 92 88 0.2872 0.2935 0.3068 2.53e-06 3b83-a1-m8-cB_3b83-a1-m2-cA, 3b83-a1-m8-cD_3b83-a1-m8-cB
25 3b83-a1-m4-cF 92 88 0.2872 0.2935 0.3068 2.53e-06 3b83-a1-m4-cF_3b83-a1-m4-cE
26 3t1w-a1-m2-cA 368 76 0.2447 0.0625 0.3026 8.77e-06 3t1w-a1-m1-cA_3t1w-a1-m2-cA
27 3t1w-a1-m2-cA 368 97 0.2872 0.0734 0.2784 0.011 3t1w-a1-m1-cA_3t1w-a1-m2-cA
28 3t1w-a1-m2-cA 368 72 0.1809 0.0462 0.2361 0.051 3t1w-a1-m1-cA_3t1w-a1-m2-cA
29 3t1w-a1-m1-cA 368 76 0.2447 0.0625 0.3026 8.77e-06 3t1w-a1-m1-cA_3t1w-a1-m2-cA
30 3t1w-a1-m1-cA 368 97 0.2872 0.0734 0.2784 0.011 3t1w-a1-m1-cA_3t1w-a1-m2-cA
31 3t1w-a1-m1-cA 368 72 0.1809 0.0462 0.2361 0.051 3t1w-a1-m1-cA_3t1w-a1-m2-cA
32 5j7k-a1-m1-cC 78 69 0.2766 0.3333 0.3768 1.10e-05 5j7k-a1-m1-cC_5j7k-a1-m1-cA
33 7y8s-a1-m1-cA 275 68 0.2128 0.0727 0.2941 2.98e-04 7y8s-a1-m1-cA_7y8s-a1-m1-cB
34 7y8s-a1-m1-cA 275 91 0.2553 0.0873 0.2637 0.42 7y8s-a1-m1-cA_7y8s-a1-m1-cB
35 7y8s-a1-m1-cB 288 70 0.2128 0.0694 0.2857 5.96e-04 7y8s-a1-m1-cA_7y8s-a1-m1-cB
36 7y8s-a1-m1-cB 288 91 0.2553 0.0833 0.2637 0.43 7y8s-a1-m1-cA_7y8s-a1-m1-cB
37 5fn8-a2-m3-cA 178 87 0.2553 0.1348 0.2759 0.026 5fn8-a2-m1-cA_5fn8-a2-m3-cA
38 5fn8-a2-m1-cA 178 87 0.2553 0.1348 0.2759 0.026 5fn8-a2-m1-cA_5fn8-a2-m3-cA
39 4yfg-a1-m1-cB 481 79 0.2872 0.0561 0.3418 0.073 4yfg-a1-m1-cA_4yfg-a1-m1-cB
40 4yfg-a1-m1-cB 481 93 0.2872 0.0561 0.2903 4.7 4yfg-a1-m1-cA_4yfg-a1-m1-cB
41 4yfg-a1-m1-cA 481 79 0.2872 0.0561 0.3418 0.073 4yfg-a1-m1-cA_4yfg-a1-m1-cB
42 4yfg-a1-m1-cA 481 93 0.2872 0.0561 0.2903 4.7 4yfg-a1-m1-cA_4yfg-a1-m1-cB
43 2vkw-a1-m1-cB 195 101 0.3191 0.1538 0.2970 0.64 2vkw-a1-m1-cB_2vkw-a1-m1-cA
44 3mtr-a1-m1-cB 197 101 0.3191 0.1523 0.2970 0.65 3mtr-a1-m1-cA_3mtr-a1-m1-cB
45 2vkw-a1-m1-cA 197 101 0.3191 0.1523 0.2970 0.66 2vkw-a1-m1-cB_2vkw-a1-m1-cA
46 3mtr-a1-m1-cA 197 101 0.3191 0.1523 0.2970 0.69 3mtr-a1-m1-cA_3mtr-a1-m1-cB
47 2vkx-a2-m1-cD 198 101 0.3191 0.1515 0.2970 0.73 2vkx-a2-m1-cC_2vkx-a2-m1-cD
48 2vkx-a2-m1-cC 198 101 0.3191 0.1515 0.2970 0.73 2vkx-a2-m1-cC_2vkx-a2-m1-cD
49 5j7k-a2-m1-cD 54 15 0.0957 0.1667 0.6000 1.2 5j7k-a2-m1-cD_5j7k-a2-m1-cG
50 2v5y-a1-m2-cA 564 43 0.1596 0.0266 0.3488 1.2 2v5y-a1-m1-cA_2v5y-a1-m2-cA
51 2v5y-a1-m1-cA 564 43 0.1596 0.0266 0.3488 1.2 2v5y-a1-m1-cA_2v5y-a1-m2-cA
52 6oe2-a1-m2-cA 160 38 0.1489 0.0875 0.3684 2.5 6oe2-a1-m1-cA_6oe2-a1-m2-cA
53 6oe2-a1-m1-cA 160 38 0.1489 0.0875 0.3684 2.5 6oe2-a1-m1-cA_6oe2-a1-m2-cA
54 5x83-a1-m1-cD 195 75 0.2128 0.1026 0.2667 3.1 5x83-a1-m1-cD_5x83-a1-m1-cB
55 5w6f-a1-m1-cC 616 20 0.1064 0.0162 0.5000 3.7 5w6f-a1-m1-cB_5w6f-a1-m1-cC
56 5w6f-a1-m1-cB 616 20 0.1064 0.0162 0.5000 3.7 5w6f-a1-m1-cB_5w6f-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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