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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=65)
VSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIVARLKNNNRQVCIDPKLKWIQEYL
EKALN

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4uai-a1-m1-cA 68 65 1.0000 0.9559 1.0000 1.80e-43 4uai-a1-m1-cB_4uai-a1-m1-cA
2 3hp3-a3-m1-cF 65 65 1.0000 1.0000 1.0000 1.81e-43 3hp3-a3-m1-cD_3hp3-a3-m1-cF
3 4uai-a1-m1-cB 67 65 1.0000 0.9701 1.0000 2.18e-43 4uai-a1-m1-cB_4uai-a1-m1-cA
4 3hp3-a3-m1-cD 64 64 0.9846 1.0000 1.0000 7.93e-43 3hp3-a3-m1-cD_3hp3-a3-m1-cF
5 5yam-a1-m1-cB 69 55 0.3231 0.3043 0.3818 1.57e-04 5yam-a1-m1-cA_5yam-a1-m1-cB
6 5yam-a1-m1-cA 69 55 0.3231 0.3043 0.3818 1.57e-04 5yam-a1-m1-cA_5yam-a1-m1-cB
7 1qe6-a3-m1-cD 72 46 0.2615 0.2361 0.3696 3.62e-04 1qe6-a3-m2-cB_1qe6-a3-m1-cD
8 1qe6-a3-m2-cA 68 46 0.2615 0.2500 0.3696 3.86e-04 1qe6-a3-m2-cA_1qe6-a3-m2-cB
9 1qe6-a3-m2-cB 71 46 0.2615 0.2394 0.3696 3.92e-04 1qe6-a3-m2-cA_1qe6-a3-m2-cB, 1qe6-a3-m2-cB_1qe6-a3-m1-cD
10 3n52-a3-m1-cD 70 67 0.3231 0.3000 0.3134 5.15e-04 3n52-a3-m1-cC_3n52-a3-m1-cD, 3n52-a3-m1-cD_3n52-a3-m1-cB
11 3n52-a3-m1-cB 71 67 0.3231 0.2958 0.3134 5.79e-04 3n52-a3-m1-cD_3n52-a3-m1-cB
12 1mi2-a1-m1-cB 73 67 0.3231 0.2877 0.3134 6.34e-04 1mi2-a1-m1-cA_1mi2-a1-m1-cB
13 1mi2-a1-m1-cA 73 67 0.3231 0.2877 0.3134 6.34e-04 1mi2-a1-m1-cA_1mi2-a1-m1-cB
14 2vxw-a1-m1-cB 69 43 0.2308 0.2174 0.3488 0.001 2vxw-a1-m1-cD_2vxw-a1-m1-cB
15 2vxw-a1-m1-cA 69 43 0.2308 0.2174 0.3488 0.001 2vxw-a1-m1-cD_2vxw-a1-m1-cA
16 2vxw-a1-m1-cD 62 43 0.2308 0.2419 0.3488 0.001 2vxw-a1-m1-cD_2vxw-a1-m1-cA, 2vxw-a1-m1-cD_2vxw-a1-m1-cB
17 1hrj-a1-m1-cB 68 45 0.2308 0.2206 0.3333 0.001 1hrj-a1-m1-cA_1hrj-a1-m1-cB
18 1hrj-a1-m1-cA 68 45 0.2308 0.2206 0.3333 0.001 1hrj-a1-m1-cA_1hrj-a1-m1-cB
19 4mhe-a2-m1-cC 61 33 0.2000 0.2131 0.3939 0.001 4mhe-a2-m1-cC_4mhe-a2-m1-cB
20 2l9h-a1-m1-cC 67 45 0.2308 0.2239 0.3333 0.001 2l9h-a1-m1-cA_2l9h-a1-m1-cC
21 2l9h-a1-m1-cA 67 45 0.2308 0.2239 0.3333 0.001 2l9h-a1-m1-cA_2l9h-a1-m1-cC
22 5l2u-a2-m2-cI 65 45 0.2308 0.2308 0.3333 0.001 5l2u-a2-m2-cG_5l2u-a2-m2-cI
23 5dnf-a1-m1-cG 65 45 0.2308 0.2308 0.3333 0.001 5dnf-a1-m1-cE_5dnf-a1-m1-cG
24 5dnf-a1-m1-cE 65 45 0.2308 0.2308 0.3333 0.001 5dnf-a1-m1-cE_5dnf-a1-m1-cG
25 5dnf-a1-m1-cD 65 45 0.2308 0.2308 0.3333 0.001 5dnf-a1-m1-cA_5dnf-a1-m1-cD
26 5dnf-a1-m1-cA 65 45 0.2308 0.2308 0.3333 0.001 5dnf-a1-m1-cA_5dnf-a1-m1-cD
27 5l2u-a2-m2-cH 64 45 0.2308 0.2344 0.3333 0.001 5l2u-a2-m2-cG_5l2u-a2-m2-cH
28 5l2u-a2-m2-cG 64 45 0.2308 0.2344 0.3333 0.001 5l2u-a2-m2-cG_5l2u-a2-m2-cH, 5l2u-a2-m2-cG_5l2u-a2-m2-cI
29 6aez-a1-m3-cA 64 45 0.2308 0.2344 0.3333 0.001 6aez-a1-m2-cA_6aez-a1-m3-cA
30 6aez-a1-m2-cA 64 45 0.2308 0.2344 0.3333 0.001 6aez-a1-m2-cA_6aez-a1-m3-cA
31 4mhe-a2-m1-cB 69 34 0.2000 0.1884 0.3824 0.001 4mhe-a2-m1-cC_4mhe-a2-m1-cB
32 3n52-a3-m1-cC 67 62 0.3077 0.2985 0.3226 0.001 3n52-a3-m1-cC_3n52-a3-m1-cD
33 6log-a1-m2-cA 63 43 0.2308 0.2381 0.3488 0.002 6log-a1-m1-cA_6log-a1-m2-cA
34 6log-a1-m1-cA 63 43 0.2308 0.2381 0.3488 0.002 6log-a1-m1-cA_6log-a1-m2-cA
35 1ncv-a1-m1-cB 76 61 0.1846 0.1579 0.1967 0.004 1ncv-a1-m1-cA_1ncv-a1-m1-cB
36 1ncv-a1-m1-cA 76 61 0.1846 0.1579 0.1967 0.004 1ncv-a1-m1-cA_1ncv-a1-m1-cB
37 5ltl-a1-m1-cA 67 33 0.1846 0.1791 0.3636 0.005 5ltl-a1-m1-cA_5ltl-a1-m1-cB
38 5ltl-a1-m1-cB 68 33 0.1846 0.1765 0.3636 0.005 5ltl-a1-m1-cA_5ltl-a1-m1-cB
39 1rod-a1-m1-cB 72 47 0.2308 0.2083 0.3191 0.008 1rod-a1-m1-cA_1rod-a1-m1-cB
40 1rod-a1-m1-cA 72 47 0.2308 0.2083 0.3191 0.008 1rod-a1-m1-cA_1rod-a1-m1-cB
41 2mgs-a1-m1-cB 71 62 0.2615 0.2394 0.2742 0.009 2mgs-a1-m1-cA_2mgs-a1-m1-cB
42 2mgs-a1-m1-cA 71 62 0.2615 0.2394 0.2742 0.009 2mgs-a1-m1-cA_2mgs-a1-m1-cB
43 2ra4-a4-m4-cB 65 36 0.1692 0.1692 0.3056 0.010 2ra4-a4-m2-cB_2ra4-a4-m4-cB
44 2ra4-a4-m2-cB 65 36 0.1692 0.1692 0.3056 0.010 2ra4-a4-m2-cB_2ra4-a4-m4-cB
45 2ra4-a2-m4-cB 65 36 0.1692 0.1692 0.3056 0.010 2ra4-a2-m4-cA_2ra4-a2-m4-cB
46 2ra4-a2-m4-cA 65 36 0.1692 0.1692 0.3056 0.010 2ra4-a2-m4-cA_2ra4-a2-m4-cB
47 1msh-a1-m1-cB 72 67 0.2923 0.2639 0.2836 0.012 1msh-a1-m1-cA_1msh-a1-m1-cB
48 1msh-a1-m1-cA 72 67 0.2923 0.2639 0.2836 0.012 1msh-a1-m1-cA_1msh-a1-m1-cB
49 1tvx-a1-m1-cD 71 61 0.2615 0.2394 0.2787 0.035 1tvx-a1-m1-cB_1tvx-a1-m1-cD, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
50 1tvx-a1-m1-cB 71 61 0.2615 0.2394 0.2787 0.035 1tvx-a1-m1-cB_1tvx-a1-m1-cD
51 1tvx-a1-m1-cC 64 61 0.2615 0.2656 0.2787 0.036 1tvx-a1-m1-cA_1tvx-a1-m1-cC, 1tvx-a1-m1-cC_1tvx-a1-m1-cD
52 1tvx-a1-m1-cA 64 61 0.2615 0.2656 0.2787 0.036 1tvx-a1-m1-cA_1tvx-a1-m1-cC
53 6wzk-a1-m1-cF 64 62 0.2769 0.2812 0.2903 0.090 6wzk-a1-m1-cE_6wzk-a1-m1-cF
54 6wzk-a1-m1-cE 64 62 0.2769 0.2812 0.2903 0.090 6wzk-a1-m1-cE_6wzk-a1-m1-cF
55 1pfn-a1-m1-cD 68 62 0.2769 0.2647 0.2903 0.40 1pfn-a1-m1-cB_1pfn-a1-m1-cD
56 1pfn-a1-m1-cC 68 62 0.2769 0.2647 0.2903 0.40 1pfn-a1-m1-cB_1pfn-a1-m1-cC
57 1pfn-a1-m1-cB 68 62 0.2769 0.2647 0.2903 0.40 1pfn-a1-m1-cB_1pfn-a1-m1-cC, 1pfn-a1-m1-cB_1pfn-a1-m1-cD
58 2q8r-a2-m1-cG 63 30 0.1231 0.1270 0.2667 0.79 2q8r-a2-m1-cF_2q8r-a2-m1-cG
59 2q8r-a2-m1-cF 63 30 0.1231 0.1270 0.2667 0.79 2q8r-a2-m1-cF_2q8r-a2-m1-cG
60 6wzj-a1-m1-cF 59 62 0.2769 0.3051 0.2903 1.2 6wzj-a1-m1-cF_6wzj-a1-m1-cE
61 2r3z-a1-m1-cD 64 28 0.1385 0.1406 0.3214 1.2 2r3z-a1-m1-cD_2r3z-a1-m1-cA
62 2r3z-a1-m1-cB 67 28 0.1385 0.1343 0.3214 1.4 2r3z-a1-m1-cB_2r3z-a1-m1-cA
63 2r3z-a1-m1-cA 68 28 0.1385 0.1324 0.3214 1.4 2r3z-a1-m1-cB_2r3z-a1-m1-cA, 2r3z-a1-m1-cD_2r3z-a1-m1-cA
64 6wzj-a1-m1-cE 63 62 0.2462 0.2540 0.2581 2.1 6wzj-a1-m1-cF_6wzj-a1-m1-cE
65 2jp1-a1-m1-cB 60 43 0.1538 0.1667 0.2326 2.2 2jp1-a1-m1-cA_2jp1-a1-m1-cB
66 2jp1-a1-m1-cA 60 43 0.1538 0.1667 0.2326 2.2 2jp1-a1-m1-cA_2jp1-a1-m1-cB
67 4r9y-a1-m1-cD 65 62 0.2615 0.2615 0.2742 2.5 4r9y-a1-m1-cB_4r9y-a1-m1-cD
68 4r9y-a1-m1-cB 65 62 0.2615 0.2615 0.2742 2.5 4r9y-a1-m1-cB_4r9y-a1-m1-cD
69 4r9w-a1-m2-cA 62 62 0.2615 0.2742 0.2742 2.7 4r9w-a1-m2-cA_4r9w-a1-m2-cB
70 4r9w-a1-m1-cA 62 62 0.2615 0.2742 0.2742 2.7 4r9w-a1-m1-cA_4r9w-a1-m2-cB
71 1f9q-a1-m1-cC 62 62 0.2615 0.2742 0.2742 2.7 1f9q-a1-m1-cB_1f9q-a1-m1-cC
72 1f9q-a1-m1-cB 62 62 0.2615 0.2742 0.2742 2.7 1f9q-a1-m1-cB_1f9q-a1-m1-cC
73 4r9w-a1-m2-cB 64 62 0.2615 0.2656 0.2742 2.8 4r9w-a1-m1-cA_4r9w-a1-m2-cB, 4r9w-a1-m2-cA_4r9w-a1-m2-cB
74 1esr-a1-m2-cA 75 59 0.1846 0.1600 0.2034 4.0 1esr-a1-m1-cA_1esr-a1-m2-cA
75 1esr-a1-m1-cA 75 59 0.1846 0.1600 0.2034 4.0 1esr-a1-m1-cA_1esr-a1-m2-cA
76 7s5a-a1-m1-cB 76 59 0.1846 0.1579 0.2034 4.1 7s5a-a1-m1-cA_7s5a-a1-m1-cB
77 7s5a-a1-m1-cA 73 59 0.1846 0.1644 0.2034 4.3 7s5a-a1-m1-cA_7s5a-a1-m1-cB
78 2n54-a1-m1-cB 66 43 0.1538 0.1515 0.2326 5.2 2n54-a1-m1-cA_2n54-a1-m1-cB
79 2n54-a1-m1-cA 66 43 0.1538 0.1515 0.2326 5.2 2n54-a1-m1-cA_2n54-a1-m1-cB
80 1f2l-a1-m1-cD 70 34 0.1231 0.1143 0.2353 5.3 1f2l-a1-m1-cA_1f2l-a1-m1-cD, 1f2l-a1-m1-cC_1f2l-a1-m1-cD
81 1f2l-a1-m1-cC 64 34 0.1231 0.1250 0.2353 5.8 1f2l-a1-m1-cC_1f2l-a1-m1-cD
82 1f2l-a1-m1-cA 64 34 0.1231 0.1250 0.2353 5.8 1f2l-a1-m1-cA_1f2l-a1-m1-cD
83 5eki-a7-m1-cF 70 52 0.2154 0.2000 0.2692 8.0 5eki-a7-m1-cF_5eki-a7-m1-cA
84 5eki-a7-m1-cA 72 52 0.2154 0.1944 0.2692 8.2 5eki-a7-m1-cF_5eki-a7-m1-cA

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Reference:
Jacob Schwartz et al.

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