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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=86)
VTLWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRAL
RYYYDKNIIRKVSGQKFVYKFVSYPE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1dux-a1-m1-cF 86 86 1.0000 1.0000 1.0000 4.02e-60 1dux-a1-m1-cC_1dux-a1-m1-cF
2 1dux-a1-m1-cC 86 86 1.0000 1.0000 1.0000 4.02e-60 1dux-a1-m1-cC_1dux-a1-m1-cF
3 4uuv-a2-m1-cG 95 86 0.6047 0.5474 0.6047 1.10e-35 4uuv-a2-m1-cD_4uuv-a2-m1-cG
4 4uuv-a2-m1-cD 95 86 0.6047 0.5474 0.6047 1.10e-35 4uuv-a2-m1-cD_4uuv-a2-m1-cG
5 5ilv-a2-m2-cA 92 86 0.5930 0.5543 0.5930 1.46e-34 5ilv-a2-m1-cA_5ilv-a2-m2-cA
6 5ilv-a2-m1-cA 92 86 0.5930 0.5543 0.5930 1.46e-34 5ilv-a2-m1-cA_5ilv-a2-m2-cA
7 2nny-a1-m1-cB 129 83 0.6163 0.4109 0.6386 7.51e-33 2nny-a1-m1-cA_2nny-a1-m1-cB
8 2nny-a1-m1-cA 129 83 0.6163 0.4109 0.6386 7.51e-33 2nny-a1-m1-cA_2nny-a1-m1-cB
9 5e8i-a2-m1-cJ 93 81 0.5814 0.5376 0.6173 1.51e-32 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
10 5e8i-a2-m1-cD 93 81 0.5814 0.5376 0.6173 1.51e-32 5e8i-a2-m1-cD_5e8i-a2-m1-cJ
11 5ybc-a1-m1-cA 92 81 0.5814 0.5435 0.6173 2.18e-32 5ybc-a1-m1-cC_5ybc-a1-m1-cA
12 5ybc-a1-m1-cC 91 81 0.5814 0.5495 0.6173 2.56e-32 5ybc-a1-m1-cC_5ybc-a1-m1-cA
13 6dat-a2-m1-cD 135 83 0.6047 0.3852 0.6265 6.44e-32 6dat-a2-m1-cC_6dat-a2-m1-cD
14 6dat-a2-m1-cC 135 83 0.6047 0.3852 0.6265 6.44e-32 6dat-a2-m1-cC_6dat-a2-m1-cD
15 3wu0-a1-m1-cA 140 83 0.6047 0.3714 0.6265 6.51e-32 3wu0-a1-m1-cB_3wu0-a1-m1-cA
16 1gvj-a1-m1-cB 146 83 0.6047 0.3562 0.6265 6.68e-32 1gvj-a1-m1-cA_1gvj-a1-m1-cB
17 1gvj-a1-m1-cA 141 83 0.6047 0.3688 0.6265 7.07e-32 1gvj-a1-m1-cA_1gvj-a1-m1-cB
18 3wu0-a1-m1-cB 136 83 0.6047 0.3824 0.6265 7.08e-32 3wu0-a1-m1-cB_3wu0-a1-m1-cA
19 2ypr-a1-m1-cB 92 81 0.5814 0.5435 0.6173 7.62e-32 2ypr-a1-m1-cB_2ypr-a1-m1-cA
20 2ypr-a1-m1-cA 96 81 0.5814 0.5208 0.6173 8.27e-32 2ypr-a1-m1-cB_2ypr-a1-m1-cA
21 4zah-a4-m1-cH 368 55 0.1744 0.0408 0.2727 1.0 4zah-a4-m1-cG_4zah-a4-m1-cH
22 4zah-a4-m1-cG 367 55 0.1744 0.0409 0.2727 6.1 4zah-a4-m1-cG_4zah-a4-m1-cH
23 8a30-a1-m2-cA 652 28 0.1279 0.0169 0.3929 7.5 8a30-a1-m1-cA_8a30-a1-m2-cA
24 8a30-a1-m1-cA 652 28 0.1279 0.0169 0.3929 7.5 8a30-a1-m1-cA_8a30-a1-m2-cA
25 2pnf-a1-m2-cB 248 58 0.1977 0.0685 0.2931 9.3 2pnf-a1-m1-cB_2pnf-a1-m2-cB, 2pnf-a1-m2-cA_2pnf-a1-m2-cB
26 2pnf-a1-m2-cA 248 58 0.1977 0.0685 0.2931 9.3 2pnf-a1-m2-cA_2pnf-a1-m2-cB
27 2pnf-a1-m1-cB 248 58 0.1977 0.0685 0.2931 9.3 2pnf-a1-m1-cB_2pnf-a1-m2-cB
28 2eih-a1-m2-cB 343 94 0.2674 0.0671 0.2447 9.5 2eih-a1-m1-cA_2eih-a1-m2-cB, 2eih-a1-m1-cB_2eih-a1-m2-cB, 2eih-a1-m2-cA_2eih-a1-m2-cB
29 2eih-a1-m2-cA 343 94 0.2674 0.0671 0.2447 9.5 2eih-a1-m2-cA_2eih-a1-m2-cB
30 2eih-a1-m1-cB 343 94 0.2674 0.0671 0.2447 9.5 2eih-a1-m1-cB_2eih-a1-m2-cB
31 2eih-a1-m1-cA 343 94 0.2674 0.0671 0.2447 9.5 2eih-a1-m1-cA_2eih-a1-m2-cB
32 1qox-a2-m1-cP 449 45 0.1628 0.0312 0.3111 9.6 1qox-a2-m1-cJ_1qox-a2-m1-cP, 1qox-a2-m1-cO_1qox-a2-m1-cP
33 1qox-a2-m1-cO 449 45 0.1628 0.0312 0.3111 9.6 1qox-a2-m1-cO_1qox-a2-m1-cP
34 1qox-a2-m1-cJ 449 45 0.1628 0.0312 0.3111 9.6 1qox-a2-m1-cJ_1qox-a2-m1-cP
35 6blg-a2-m2-cA 375 62 0.1860 0.0427 0.2581 9.7 6blg-a2-m1-cA_6blg-a2-m2-cA
36 6blg-a2-m1-cA 375 62 0.1860 0.0427 0.2581 9.7 6blg-a2-m1-cA_6blg-a2-m2-cA

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Reference:
Jacob Schwartz et al.

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