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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=29)
VTSFFPITPFLPVVAFGRPLPKLAPQNFE

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2y0n-a1-m1-cH 29 29 1.0000 1.0000 1.0000 3.60e-14 2y0n-a1-m1-cH_2y0n-a1-m1-cE, 2y0n-a1-m1-cH_2y0n-a1-m1-cF
2 2y0n-a1-m1-cF 36 33 1.0000 0.8056 0.8788 6.10e-12 2y0n-a1-m1-cH_2y0n-a1-m1-cF
3 2y0n-a1-m1-cE 39 33 1.0000 0.7436 0.8788 7.42e-12 2y0n-a1-m1-cH_2y0n-a1-m1-cE
4 2wvy-a1-m1-cC 730 19 0.3103 0.0123 0.4737 2.5 2wvy-a1-m1-cB_2wvy-a1-m1-cC
5 2wvy-a1-m1-cB 729 19 0.3103 0.0123 0.4737 2.5 2wvy-a1-m1-cB_2wvy-a1-m1-cC
6 4o1e-a1-m1-cA 271 22 0.3448 0.0369 0.4545 2.9 4o1e-a1-m1-cB_4o1e-a1-m1-cA
7 4o1e-a1-m1-cB 267 22 0.3448 0.0375 0.4545 3.2 4o1e-a1-m1-cB_4o1e-a1-m1-cA
8 2ipf-a1-m1-cB 318 18 0.2759 0.0252 0.4444 7.9 2ipf-a1-m1-cA_2ipf-a1-m1-cB
9 2ipf-a1-m1-cA 318 18 0.2759 0.0252 0.4444 7.9 2ipf-a1-m1-cA_2ipf-a1-m1-cB
10 2he5-a2-m1-cB 318 18 0.2759 0.0252 0.4444 7.9 2he5-a2-m1-cD_2he5-a2-m1-cB
11 2he5-a2-m1-cD 314 18 0.2759 0.0255 0.4444 8.4 2he5-a2-m1-cD_2he5-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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