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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=87)
VTYEKTFEIEIINELSASVYNRVLNYVLNHELNKNDSQLLEVNLLNQLKLAKRVNLFDYS
LEELQAVHEYWRSMNRYSKQVLNKEKV

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1gvn-a1-m1-cA 87 87 1.0000 1.0000 1.0000 9.31e-57 1gvn-a1-m1-cC_1gvn-a1-m1-cA
2 1gvn-a1-m1-cC 85 84 0.9655 0.9882 1.0000 8.92e-55 1gvn-a1-m1-cC_1gvn-a1-m1-cA
3 7t64-a1-m1-cD 4247 90 0.2874 0.0059 0.2778 3.7 7t64-a1-m1-cC_7t64-a1-m1-cD
4 7t64-a1-m1-cC 4247 90 0.2874 0.0059 0.2778 3.7 7t64-a1-m1-cC_7t64-a1-m1-cD
5 4esw-a1-m1-cB 342 25 0.1149 0.0292 0.4000 6.7 4esw-a1-m1-cA_4esw-a1-m1-cB
6 4esw-a1-m1-cA 342 25 0.1149 0.0292 0.4000 6.7 4esw-a1-m1-cA_4esw-a1-m1-cB
7 3j8h-a1-m1-cG 3660 86 0.2874 0.0068 0.2907 8.8 3j8h-a1-m1-cE_3j8h-a1-m1-cG
8 3j8h-a1-m1-cE 3660 86 0.2874 0.0068 0.2907 8.8 3j8h-a1-m1-cE_3j8h-a1-m1-cG
9 6rxx-a1-m1-cUI 125 38 0.1839 0.1280 0.4211 9.3 6rxx-a1-m1-cUE_6rxx-a1-m1-cUI
10 6rxx-a1-m1-cUE 125 38 0.1839 0.1280 0.4211 9.3 6rxx-a1-m1-cUE_6rxx-a1-m1-cUI
11 8duj-a1-m1-cA 3823 90 0.2874 0.0065 0.2778 9.8 8duj-a1-m1-cA_8duj-a1-m1-cG

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Reference:
Jacob Schwartz et al.

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