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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=68)
VVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRKFGKIEGKNVFYWFQNHKAR
ERQKRRRQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 6wig-a1-m2-cA 84 68 1.0000 0.8095 1.0000 8.20e-46 6wig-a1-m1-cB_6wig-a1-m2-cA
2 6wig-a1-m1-cB 68 68 1.0000 1.0000 1.0000 3.66e-45 6wig-a1-m1-cB_6wig-a1-m2-cA
3 6ryd-a2-m1-cE 68 66 0.6765 0.6765 0.6970 1.99e-29 6ryd-a2-m1-cF_6ryd-a2-m1-cE
4 6ryl-a2-m1-cE 64 64 0.6618 0.7031 0.7031 1.17e-28 6ryl-a2-m1-cD_6ryl-a2-m1-cE
5 6ryl-a2-m1-cD 63 63 0.6471 0.6984 0.6984 4.21e-28 6ryl-a2-m1-cD_6ryl-a2-m1-cE
6 6ryd-a2-m1-cF 58 58 0.6029 0.7069 0.7069 1.22e-25 6ryd-a2-m1-cF_6ryd-a2-m1-cE
7 5ehm-a1-m1-cB 257 57 0.2647 0.0700 0.3158 0.73 5ehm-a1-m1-cB_5ehm-a1-m1-cA
8 5ehm-a1-m1-cA 261 57 0.2647 0.0690 0.3158 0.80 5ehm-a1-m1-cB_5ehm-a1-m1-cA
9 3rv5-a5-m4-cD 73 20 0.1324 0.1233 0.4500 0.84 3rv5-a5-m2-cB_3rv5-a5-m4-cD, 3rv5-a5-m4-cD_3rv5-a5-m4-cC
10 3rv5-a5-m2-cB 73 20 0.1324 0.1233 0.4500 0.84 3rv5-a5-m2-cB_3rv5-a5-m4-cD
11 3rv5-a5-m1-cB 73 20 0.1324 0.1233 0.4500 0.84 3rv5-a5-m1-cB_3rv5-a5-m4-cC
12 3rv5-a5-m4-cC 77 20 0.1324 0.1169 0.4500 0.90 3rv5-a5-m1-cB_3rv5-a5-m4-cC, 3rv5-a5-m4-cD_3rv5-a5-m4-cC
13 3fai-a2-m2-cA 227 32 0.1912 0.0573 0.4062 3.9 3fai-a2-m1-cA_3fai-a2-m2-cA
14 3fai-a2-m1-cA 227 32 0.1912 0.0573 0.4062 3.9 3fai-a2-m1-cA_3fai-a2-m2-cA
15 2dt5-a2-m2-cB 211 48 0.2941 0.0948 0.4167 5.9 2dt5-a2-m1-cB_2dt5-a2-m2-cB
16 2dt5-a2-m1-cB 211 48 0.2941 0.0948 0.4167 5.9 2dt5-a2-m1-cB_2dt5-a2-m2-cB
17 2dt5-a2-m2-cA 210 48 0.2941 0.0952 0.4167 6.8 2dt5-a2-m1-cA_2dt5-a2-m2-cA
18 2dt5-a2-m1-cA 210 48 0.2941 0.0952 0.4167 6.8 2dt5-a2-m1-cA_2dt5-a2-m2-cA
19 3lvy-a1-m1-cB 180 29 0.1618 0.0611 0.3793 7.5 3lvy-a1-m1-cB_3lvy-a1-m1-cA
20 3lvy-a1-m1-cA 181 29 0.1618 0.0608 0.3793 7.6 3lvy-a1-m1-cB_3lvy-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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