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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=88)
WMGRAKEIGNGGWDQFQFLFFDPNGYLYAVSNDKLYKASPPQSDTDNWIARATEIGSGGW
SGFKFLFFHPNGYLYAVRGQRFYKALPP

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3kif-a3-m1-cI 94 88 1.0000 0.9362 1.0000 4.80e-62 3kif-a3-m1-cH_3kif-a3-m1-cI
2 3kif-a3-m1-cI 94 45 0.3409 0.3191 0.6667 1.26e-16 3kif-a3-m1-cH_3kif-a3-m1-cI
3 3kif-a3-m1-cI 94 43 0.3182 0.2979 0.6512 7.47e-14 3kif-a3-m1-cH_3kif-a3-m1-cI
4 3kif-a3-m1-cJ 93 88 1.0000 0.9462 1.0000 5.26e-62 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
5 3kif-a3-m1-cJ 93 42 0.3182 0.3011 0.6667 1.64e-14 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
6 3kif-a3-m1-cJ 93 44 0.3182 0.3011 0.6364 4.42e-14 3kif-a3-m1-cG_3kif-a3-m1-cJ, 3kif-a3-m1-cH_3kif-a3-m1-cJ
7 3kif-a3-m1-cF 92 88 1.0000 0.9565 1.0000 6.78e-62 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
8 3kif-a3-m1-cF 92 44 0.3295 0.3152 0.6591 1.14e-15 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cF
9 3kif-a1-m1-cA 93 88 1.0000 0.9462 1.0000 6.92e-62 3kif-a1-m1-cG_3kif-a1-m1-cA
10 3kif-a1-m1-cA 93 45 0.3409 0.3226 0.6667 1.44e-16 3kif-a1-m1-cG_3kif-a1-m1-cA
11 3kif-a3-m1-cG 88 88 1.0000 1.0000 1.0000 8.34e-62 3kif-a3-m1-cG_3kif-a3-m1-cF, 3kif-a3-m1-cG_3kif-a3-m1-cJ
12 3kif-a1-m1-cG 88 88 1.0000 1.0000 1.0000 8.34e-62 3kif-a1-m1-cG_3kif-a1-m1-cA
13 3kif-a3-m1-cH 85 83 0.9432 0.9765 1.0000 1.06e-57 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
14 3kif-a3-m1-cH 85 43 0.3182 0.3294 0.6512 4.66e-14 3kif-a3-m1-cH_3kif-a3-m1-cF, 3kif-a3-m1-cH_3kif-a3-m1-cI, 3kif-a3-m1-cH_3kif-a3-m1-cJ
15 3kih-a1-m1-cB 95 59 0.6023 0.5579 0.8983 3.96e-34 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
16 3kih-a1-m1-cB 95 77 0.5341 0.4947 0.6104 1.12e-30 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cB
17 3kih-a1-m1-cC 91 57 0.5795 0.5604 0.8947 7.77e-33 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
18 3kih-a1-m1-cC 91 77 0.5227 0.5055 0.5974 7.37e-28 3kih-a1-m1-cA_3kih-a1-m1-cC, 3kih-a1-m1-cC_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC
19 3kih-a1-m1-cE 90 56 0.5682 0.5556 0.8929 3.74e-32 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
20 3kih-a1-m1-cE 90 77 0.5227 0.5111 0.5974 9.22e-28 3kih-a1-m1-cE_3kih-a1-m1-cB, 3kih-a1-m1-cE_3kih-a1-m1-cC, 3kih-a1-m1-cE_3kih-a1-m1-cD
21 3kih-a1-m1-cA 90 56 0.5682 0.5556 0.8929 3.74e-32 3kih-a1-m1-cA_3kih-a1-m1-cC
22 3kih-a1-m1-cA 90 77 0.5227 0.5111 0.5974 9.22e-28 3kih-a1-m1-cA_3kih-a1-m1-cC
23 3kih-a1-m1-cD 91 55 0.5568 0.5385 0.8909 2.27e-31 3kih-a1-m1-cE_3kih-a1-m1-cD
24 3kih-a1-m1-cD 91 77 0.5341 0.5165 0.6104 1.14e-30 3kih-a1-m1-cE_3kih-a1-m1-cD
25 1g8k-a6-m1-cC 822 80 0.2386 0.0255 0.2625 3.4 1g8k-a6-m1-cA_1g8k-a6-m1-cC
26 1g8k-a6-m1-cA 822 80 0.2386 0.0255 0.2625 3.4 1g8k-a6-m1-cA_1g8k-a6-m1-cC
27 7t2p-a1-m3-cA 493 65 0.1932 0.0345 0.2615 3.8 7t2p-a1-m2-cA_7t2p-a1-m3-cA
28 7t2p-a1-m2-cA 493 65 0.1932 0.0345 0.2615 3.8 7t2p-a1-m2-cA_7t2p-a1-m3-cA
29 7vee-a1-m2-cA 828 52 0.2045 0.0217 0.3462 4.0 7vee-a1-m1-cA_7vee-a1-m2-cA
30 7vee-a1-m1-cA 828 52 0.2045 0.0217 0.3462 4.0 7vee-a1-m1-cA_7vee-a1-m2-cA
31 5w4a-a2-m1-cD 210 26 0.1250 0.0524 0.4231 4.3 5w4a-a2-m1-cD_5w4a-a2-m1-cB
32 5w4a-a2-m1-cB 212 26 0.1250 0.0519 0.4231 4.4 5w4a-a2-m1-cD_5w4a-a2-m1-cB

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Reference:
Jacob Schwartz et al.

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