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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=50)
YAVAESVIGKRVGDDGKTIEYLVKWTDMSDATWEPQDNVDSTLVLLYQQQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5e4x-a1-m8-cA 50 50 1.0000 1.0000 1.0000 1.87e-31 5e4x-a1-m2-cA_5e4x-a1-m8-cA
2 5e4x-a1-m2-cA 50 50 1.0000 1.0000 1.0000 1.87e-31 5e4x-a1-m2-cA_5e4x-a1-m8-cA
3 3dm1-a5-m1-cC 52 41 0.3800 0.3654 0.4634 6.91e-05 3dm1-a5-m1-cC_3dm1-a5-m1-cE, 3dm1-a5-m1-cC_3dm1-a5-m1-cG
4 3dm1-a5-m1-cA 52 41 0.3800 0.3654 0.4634 6.91e-05 3dm1-a5-m1-cA_3dm1-a5-m1-cG
5 3dm1-a5-m1-cG 53 41 0.3800 0.3585 0.4634 7.05e-05 3dm1-a5-m1-cA_3dm1-a5-m1-cG, 3dm1-a5-m1-cC_3dm1-a5-m1-cG, 3dm1-a5-m1-cE_3dm1-a5-m1-cG
6 3dm1-a5-m1-cE 53 41 0.3800 0.3585 0.4634 7.05e-05 3dm1-a5-m1-cC_3dm1-a5-m1-cE, 3dm1-a5-m1-cE_3dm1-a5-m1-cG
7 3f2u-a1-m2-cA 51 41 0.4000 0.3922 0.4878 1.94e-04 3f2u-a1-m1-cA_3f2u-a1-m2-cA
8 3f2u-a1-m1-cA 51 41 0.4000 0.3922 0.4878 1.94e-04 3f2u-a1-m1-cA_3f2u-a1-m2-cA
9 4quf-a2-m1-cD 58 46 0.3200 0.2759 0.3478 0.007 4quf-a2-m1-cD_4quf-a2-m1-cC
10 4quf-a2-m1-cC 61 46 0.3200 0.2623 0.3478 0.007 4quf-a2-m1-cD_4quf-a2-m1-cC
11 3dmp-a3-m1-cD 214 23 0.2000 0.0467 0.4348 3.0 3dmp-a3-m1-cC_3dmp-a3-m1-cD
12 3dmp-a3-m1-cB 214 23 0.2000 0.0467 0.4348 3.0 3dmp-a3-m1-cC_3dmp-a3-m1-cB
13 3dmp-a3-m1-cA 214 23 0.2000 0.0467 0.4348 3.0 3dmp-a3-m1-cC_3dmp-a3-m1-cA
14 3dmp-a2-m3-cD 214 23 0.2000 0.0467 0.4348 3.0 3dmp-a2-m1-cC_3dmp-a2-m3-cD
15 2ols-a2-m2-cA 725 27 0.2600 0.0179 0.4815 5.7 2ols-a2-m1-cA_2ols-a2-m2-cA
16 2ols-a2-m1-cA 725 27 0.2600 0.0179 0.4815 5.7 2ols-a2-m1-cA_2ols-a2-m2-cA
17 3mwy-a2-m2-cW 696 22 0.2000 0.0144 0.4545 6.7 3mwy-a2-m1-cW_3mwy-a2-m2-cW
18 3mwy-a2-m1-cW 696 22 0.2000 0.0144 0.4545 6.7 3mwy-a2-m1-cW_3mwy-a2-m2-cW

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Reference:
Jacob Schwartz et al.

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