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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
YFIETKTFTVKEGTSNIVVERFTGEGIIEKFEGFIDLSVLVKKVRRGDEEVVVIRWESEE
AWKNWETSEEHLGKPKPDHIINVDHAVYYVKSSKAAYQQ

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1tz0-a1-m1-cC 99 99 1.0000 1.0000 1.0000 2.33e-68 1tz0-a1-m1-cC_1tz0-a1-m1-cA
2 1tz0-a1-m1-cA 106 105 0.9899 0.9245 0.9333 1.35e-64 1tz0-a1-m1-cC_1tz0-a1-m1-cA
3 3lgn-a1-m1-cA 110 69 0.2020 0.1818 0.2899 0.002 3lgn-a1-m1-cB_3lgn-a1-m1-cA
4 3lgn-a1-m1-cB 109 69 0.2020 0.1835 0.2899 0.002 3lgn-a1-m1-cB_3lgn-a1-m1-cA
5 1iuj-a2-m2-cB 103 42 0.1818 0.1748 0.4286 0.005 1iuj-a2-m1-cA_1iuj-a2-m2-cB, 1iuj-a2-m2-cA_1iuj-a2-m2-cB
6 1iuj-a2-m2-cA 102 42 0.1818 0.1765 0.4286 0.005 1iuj-a2-m1-cA_1iuj-a2-m2-cA, 1iuj-a2-m2-cA_1iuj-a2-m2-cB
7 1iuj-a2-m1-cA 102 42 0.1818 0.1765 0.4286 0.005 1iuj-a2-m1-cA_1iuj-a2-m2-cA, 1iuj-a2-m1-cA_1iuj-a2-m2-cB
8 1xbw-a2-m1-cD 98 95 0.2525 0.2551 0.2632 0.008 1xbw-a2-m1-cC_1xbw-a2-m1-cD
9 2zdo-a2-m1-cD 109 69 0.2020 0.1835 0.2899 0.010 2zdo-a2-m1-cC_2zdo-a2-m1-cD
10 2zdo-a2-m1-cC 108 69 0.2020 0.1852 0.2899 0.010 2zdo-a2-m1-cC_2zdo-a2-m1-cD
11 1xbw-a2-m1-cC 90 91 0.2424 0.2667 0.2637 0.013 1xbw-a2-m1-cC_1xbw-a2-m1-cD
12 6ple-a1-m1-cB 96 64 0.1717 0.1771 0.2656 0.55 6ple-a1-m1-cA_6ple-a1-m1-cB
13 6ple-a1-m1-cA 96 64 0.1717 0.1771 0.2656 0.55 6ple-a1-m1-cA_6ple-a1-m1-cB
14 6ds7-a1-m1-cB 99 64 0.1717 0.1717 0.2656 0.75 6ds7-a1-m1-cA_6ds7-a1-m1-cB
15 6ds7-a1-m1-cA 99 64 0.1717 0.1717 0.2656 0.75 6ds7-a1-m1-cA_6ds7-a1-m1-cB
16 4nl5-a2-m2-cB 100 64 0.1717 0.1700 0.2656 0.89 4nl5-a2-m2-cB_4nl5-a2-m1-cA
17 4nl5-a2-m1-cA 101 41 0.1313 0.1287 0.3171 0.92 4nl5-a2-m2-cB_4nl5-a2-m1-cA
18 5uq4-a1-m1-cA 86 64 0.1717 0.1977 0.2656 1.0 5uq4-a1-m1-cA_5uq4-a1-m1-cB
19 5uq4-a1-m1-cB 90 67 0.1717 0.1889 0.2537 1.0 5uq4-a1-m1-cA_5uq4-a1-m1-cB
20 4ktr-a4-m1-cG 762 31 0.1010 0.0131 0.3226 5.0 4ktr-a4-m1-cH_4ktr-a4-m1-cG
21 4ktr-a4-m1-cH 761 31 0.1010 0.0131 0.3226 5.0 4ktr-a4-m1-cH_4ktr-a4-m1-cG
22 4azb-a1-m2-cA 408 51 0.1414 0.0343 0.2745 5.4 4azb-a1-m1-cA_4azb-a1-m2-cA
23 4azb-a1-m1-cA 408 51 0.1414 0.0343 0.2745 5.4 4azb-a1-m1-cA_4azb-a1-m2-cA
24 4az5-a1-m2-cA 434 51 0.1414 0.0323 0.2745 6.5 4az5-a1-m1-cA_4az5-a1-m2-cA
25 4az5-a1-m1-cA 434 51 0.1414 0.0323 0.2745 6.5 4az5-a1-m1-cA_4az5-a1-m2-cA
26 7jw9-a1-m1-cD 378 31 0.1212 0.0317 0.3871 7.1 7jw9-a1-m1-cC_7jw9-a1-m1-cD
27 7jw9-a1-m1-cC 378 31 0.1212 0.0317 0.3871 7.1 7jw9-a1-m1-cA_7jw9-a1-m1-cC, 7jw9-a1-m1-cB_7jw9-a1-m1-cC, 7jw9-a1-m1-cC_7jw9-a1-m1-cD
28 7jw9-a1-m1-cB 378 31 0.1212 0.0317 0.3871 7.1 7jw9-a1-m1-cB_7jw9-a1-m1-cC
29 7jw9-a1-m1-cA 378 31 0.1212 0.0317 0.3871 7.1 7jw9-a1-m1-cA_7jw9-a1-m1-cC

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Reference:
Jacob Schwartz et al.

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