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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
YKVTLKTPSGEETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQS
FLDDAQMGKGFVLTCVAYPTSDVTILTHQEAALY

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 1awd-a1-m2-cA 94 94 1.0000 1.0000 1.0000 2.86e-65 1awd-a1-m1-cA_1awd-a1-m2-cA
2 1awd-a1-m1-cA 94 94 1.0000 1.0000 1.0000 2.86e-65 1awd-a1-m1-cA_1awd-a1-m2-cA
3 4n58-a4-m3-cB 266 90 0.5532 0.1955 0.5778 1.92e-25 4n58-a4-m1-cB_4n58-a4-m3-cB
4 4n58-a4-m1-cB 266 90 0.5532 0.1955 0.5778 1.92e-25 4n58-a4-m1-cB_4n58-a4-m3-cB
5 1doi-a1-m6-cA 128 82 0.3511 0.2578 0.4024 8.04e-15 1doi-a1-m2-cA_1doi-a1-m6-cA, 1doi-a1-m5-cA_1doi-a1-m6-cA
6 1doi-a1-m5-cA 128 82 0.3511 0.2578 0.4024 8.04e-15 1doi-a1-m5-cA_1doi-a1-m6-cA
7 1doi-a1-m2-cA 128 82 0.3511 0.2578 0.4024 8.04e-15 1doi-a1-m2-cA_1doi-a1-m6-cA
8 3zyy-a1-m1-cX 628 86 0.2979 0.0446 0.3256 3.55e-07 3zyy-a1-m1-cY_3zyy-a1-m1-cX
9 6yav-a1-m2-cE 109 45 0.1383 0.1193 0.2889 0.027 6yav-a1-m1-cE_6yav-a1-m2-cE
10 6yav-a1-m1-cE 109 45 0.1383 0.1193 0.2889 0.027 6yav-a1-m1-cE_6yav-a1-m2-cE
11 6yav-a3-m1-cD 119 53 0.1809 0.1429 0.3208 0.041 6yav-a3-m1-cC_6yav-a3-m1-cD
12 6yav-a3-m1-cC 119 53 0.1809 0.1429 0.3208 0.041 6yav-a3-m1-cC_6yav-a3-m1-cD
13 6yav-a2-m1-cB 119 53 0.1809 0.1429 0.3208 0.041 6yav-a2-m1-cA_6yav-a2-m1-cB
14 6yav-a2-m1-cA 119 53 0.1809 0.1429 0.3208 0.041 6yav-a2-m1-cA_6yav-a2-m1-cB
15 7q4w-a1-m1-cE 583 50 0.2021 0.0326 0.3800 0.38 7q4w-a1-m1-cA_7q4w-a1-m1-cE
16 7q4w-a1-m1-cA 583 50 0.2021 0.0326 0.3800 0.38 7q4w-a1-m1-cA_7q4w-a1-m1-cE
17 3kl9-a1-m1-cL 337 34 0.1277 0.0356 0.3529 2.1 3kl9-a1-m1-cH_3kl9-a1-m1-cL, 3kl9-a1-m1-cI_3kl9-a1-m1-cL
18 3kl9-a1-m1-cI 337 34 0.1277 0.0356 0.3529 2.1 3kl9-a1-m1-cI_3kl9-a1-m1-cL
19 3kl9-a1-m1-cH 337 34 0.1277 0.0356 0.3529 2.1 3kl9-a1-m1-cH_3kl9-a1-m1-cL
20 3ozb-a1-m1-cE 236 38 0.1489 0.0593 0.3684 9.9 3ozb-a1-m1-cE_3ozb-a1-m1-cD

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Reference:
Jacob Schwartz et al.

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