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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=90)
YLEHYLDSIENLPFELQRNFQLRDLDQRTEDLKAEIDKLATEYSLSSEEKLALLKQIQEA
YGKCKEFGDDKVQLAQTYEVDKHIRRLDTD

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 4afl-a3-m1-cD 90 90 1.0000 1.0000 1.0000 6.23e-61 4afl-a3-m1-cD_4afl-a3-m1-cE
2 4afl-a3-m1-cE 96 94 1.0000 0.9375 0.9574 1.02e-58 4afl-a3-m1-cD_4afl-a3-m1-cE
3 5mto-a1-m1-cB 107 98 0.7778 0.6542 0.7143 9.73e-39 5mto-a1-m1-cA_5mto-a1-m1-cB
4 5mto-a1-m1-cA 107 98 0.7778 0.6542 0.7143 9.73e-39 5mto-a1-m1-cA_5mto-a1-m1-cB
5 8cok-a1-m1-cB 101 99 0.3889 0.3465 0.3535 4.26e-09 8cok-a1-m1-cA_8cok-a1-m1-cB
6 8cok-a1-m1-cA 98 98 0.3778 0.3469 0.3469 2.22e-08 8cok-a1-m1-cA_8cok-a1-m1-cB
7 8b3o-a1-m1-cJJJ 148 54 0.1333 0.0811 0.2222 0.40 8b3o-a1-m1-cIII_8b3o-a1-m1-cJJJ
8 8b3o-a1-m1-cIII 148 54 0.1333 0.0811 0.2222 0.40 8b3o-a1-m1-cIII_8b3o-a1-m1-cJJJ
9 3oc7-a1-m3-cA 251 47 0.1667 0.0598 0.3191 2.0 3oc7-a1-m2-cA_3oc7-a1-m3-cA
10 3oc7-a1-m2-cA 251 47 0.1667 0.0598 0.3191 2.0 3oc7-a1-m2-cA_3oc7-a1-m3-cA
11 2zxi-a2-m1-cC 604 40 0.1556 0.0232 0.3500 3.9 2zxi-a2-m1-cD_2zxi-a2-m1-cC
12 2zxh-a1-m1-cB 601 40 0.1556 0.0233 0.3500 3.9 2zxh-a1-m1-cB_2zxh-a1-m1-cA
13 2zxi-a2-m1-cD 603 40 0.1556 0.0232 0.3500 3.9 2zxi-a2-m1-cD_2zxi-a2-m1-cC
14 2zxh-a1-m1-cA 603 40 0.1556 0.0232 0.3500 3.9 2zxh-a1-m1-cB_2zxh-a1-m1-cA
15 7lhz-a2-m1-cC 714 51 0.2000 0.0252 0.3529 9.9 7lhz-a2-m1-cD_7lhz-a2-m1-cC

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Reference:
Jacob Schwartz et al.

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