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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
YPPYNLVKESNVKWRIEMALAGWSPDAVEVSTESNVLLIKSKAPHQHTDPDHEYIHRGFA
RGFNLSDDVEIGKVSFQDGLLVIDLQKIIPDH

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 7ck4-a1-m4-cB 92 92 1.0000 1.0000 1.0000 2.62e-65 7ck4-a1-m4-cB_7ck4-a1-m4-cA
2 7ck4-a1-m4-cA 106 97 1.0000 0.8679 0.9485 2.31e-63 7ck4-a1-m4-cB_7ck4-a1-m4-cA
3 7ck4-a1-m4-cE 102 93 0.9674 0.8725 0.9570 2.41e-61 7ck4-a1-m2-cE_7ck4-a1-m4-cE
4 7ck4-a1-m2-cE 102 93 0.9674 0.8725 0.9570 2.41e-61 7ck4-a1-m2-cE_7ck4-a1-m4-cE
5 6dv5-a1-m1-cP 164 86 0.2609 0.1463 0.2791 9.92e-06 6dv5-a1-m1-cP_6dv5-a1-m1-cX
6 6dv5-a1-m1-cJ 162 78 0.2500 0.1420 0.2949 3.73e-05 6dv5-a1-m1-cJ_6dv5-a1-m1-cK
7 6dv5-a1-m1-cF 163 78 0.2500 0.1411 0.2949 3.88e-05 6dv5-a1-m1-cF_6dv5-a1-m1-cU
8 6dv5-a1-m1-cX 166 78 0.2500 0.1386 0.2949 4.01e-05 6dv5-a1-m1-cP_6dv5-a1-m1-cX
9 6dv5-a1-m1-cU 175 78 0.2500 0.1314 0.2949 4.46e-05 6dv5-a1-m1-cF_6dv5-a1-m1-cU
10 6dv5-a1-m1-cK 175 78 0.2500 0.1314 0.2949 4.79e-05 6dv5-a1-m1-cJ_6dv5-a1-m1-cK
11 6f2r-a1-m1-cD 80 78 0.2500 0.2875 0.2949 0.020 6f2r-a1-m1-cD_6f2r-a1-m1-cC
12 6f2r-a1-m1-cC 121 81 0.2500 0.1901 0.2840 0.029 6f2r-a1-m1-cD_6f2r-a1-m1-cC
13 4r16-a1-m1-cB 409 33 0.1413 0.0318 0.3939 6.3 4r16-a1-m1-cA_4r16-a1-m1-cB
14 4r16-a1-m1-cA 409 33 0.1413 0.0318 0.3939 6.3 4r16-a1-m1-cA_4r16-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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