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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=75)
YQTAPFDSRFPNQNQTRNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPISWVS
TWDDRRAEGTFPGKI

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 8h8r-a1-m1-cU 75 75 1.0000 1.0000 1.0000 4.75e-54 8h8r-a1-m1-cH_8h8r-a1-m1-cU
2 8h8r-a1-m1-cH 75 75 1.0000 1.0000 1.0000 4.75e-54 8h8r-a1-m1-cH_8h8r-a1-m1-cU
3 6pce-a1-m1-cB 70 65 0.2267 0.2429 0.2615 0.016 6pce-a1-m1-cA_6pce-a1-m1-cB
4 6pcf-a1-m2-cC 56 45 0.1867 0.2500 0.3111 0.12 6pcf-a1-m2-cC_6pcf-a1-m1-cD, 6pcf-a1-m2-cC_6pcf-a1-m2-cB
5 6pcf-a1-m1-cD 64 45 0.1867 0.2188 0.3111 0.13 6pcf-a1-m2-cC_6pcf-a1-m1-cD
6 6pcf-a1-m2-cB 65 45 0.1867 0.2154 0.3111 0.15 6pcf-a1-m2-cC_6pcf-a1-m2-cB
7 6pce-a1-m1-cA 60 45 0.1867 0.2333 0.3111 0.17 6pce-a1-m1-cA_6pce-a1-m1-cB
8 3g5w-a2-m1-cF 318 18 0.1067 0.0252 0.4444 2.2 3g5w-a2-m1-cE_3g5w-a2-m1-cF
9 3g5w-a2-m1-cE 318 18 0.1067 0.0252 0.4444 2.2 3g5w-a2-m1-cE_3g5w-a2-m1-cF
10 2yeq-a3-m1-cB 522 18 0.1200 0.0172 0.5000 6.7 2yeq-a3-m1-cA_2yeq-a3-m1-cB
11 2yeq-a3-m1-cA 522 18 0.1200 0.0172 0.5000 6.7 2yeq-a3-m1-cA_2yeq-a3-m1-cB

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Reference:
Jacob Schwartz et al.

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