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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=99)
YRPLTLNALLAAQGVPVKVLDCDTISQAKEKLDQLYKGVPLTQRPDPRTLDVEWRSGVAG
HLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPC

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 2r2o-a1-m1-cA 99 99 1.0000 1.0000 1.0000 3.38e-69 2r2o-a1-m1-cA_2r2o-a1-m1-cB
2 2r2o-a1-m1-cB 102 102 1.0000 0.9706 0.9706 6.69e-67 2r2o-a1-m1-cA_2r2o-a1-m1-cB
3 2rex-a5-m1-cC 107 107 1.0000 0.9252 0.9252 1.49e-64 2rex-a5-m1-cA_2rex-a5-m1-cC
4 2rex-a5-m1-cA 107 107 1.0000 0.9252 0.9252 1.49e-64 2rex-a5-m1-cA_2rex-a5-m1-cC
5 3sua-a4-m1-cE 505 101 1.0000 0.1960 0.9802 1.68e-62 3sua-a4-m1-cE_3sua-a4-m1-cF
6 3sua-a4-m1-cF 506 101 1.0000 0.1957 0.9802 1.81e-62 3sua-a4-m1-cE_3sua-a4-m1-cF
7 4e74-a1-m2-cA 101 98 0.5051 0.4950 0.5102 1.10e-31 4e74-a1-m1-cA_4e74-a1-m2-cA
8 4e74-a1-m1-cA 101 98 0.5051 0.4950 0.5102 1.10e-31 4e74-a1-m1-cA_4e74-a1-m2-cA
9 4e71-a1-m2-cA 90 100 0.5152 0.5667 0.5100 1.12e-20 4e71-a1-m1-cA_4e71-a1-m2-cA
10 4e71-a1-m1-cA 90 100 0.5152 0.5667 0.5100 1.12e-20 4e71-a1-m1-cA_4e71-a1-m2-cA
11 3h6n-a1-m2-cA 101 96 0.3939 0.3861 0.4062 5.65e-16 3h6n-a1-m1-cA_3h6n-a1-m2-cA
12 3h6n-a1-m1-cA 101 96 0.3939 0.3861 0.4062 5.65e-16 3h6n-a1-m1-cA_3h6n-a1-m2-cA
13 4m8n-a2-m1-cC 560 104 0.3636 0.0643 0.3462 1.09e-10 4m8n-a2-m1-cC_4m8n-a2-m1-cB
14 4m8n-a2-m1-cB 571 104 0.3636 0.0630 0.3462 1.21e-10 4m8n-a2-m1-cC_4m8n-a2-m1-cB
15 3kuz-a1-m1-cB 109 89 0.2727 0.2477 0.3034 9.92e-08 3kuz-a1-m1-cB_3kuz-a1-m1-cA
16 3kuz-a1-m1-cA 110 89 0.2727 0.2455 0.3034 1.01e-07 3kuz-a1-m1-cB_3kuz-a1-m1-cA
17 1vkn-a1-m1-cD 326 45 0.1616 0.0491 0.3556 1.3 1vkn-a1-m1-cD_1vkn-a1-m1-cA, 1vkn-a1-m1-cD_1vkn-a1-m1-cB, 1vkn-a1-m1-cD_1vkn-a1-m1-cC
18 3cu7-a3-m1-cA 1625 37 0.1616 0.0098 0.4324 3.4 3cu7-a3-m1-cB_3cu7-a3-m1-cA
19 3cu7-a3-m1-cB 1481 37 0.1616 0.0108 0.4324 3.5 3cu7-a3-m1-cB_3cu7-a3-m1-cA
20 2wu8-a1-m2-cA 549 58 0.1313 0.0237 0.2241 3.8 2wu8-a1-m1-cA_2wu8-a1-m2-cA
21 2wu8-a1-m1-cA 549 58 0.1313 0.0237 0.2241 3.8 2wu8-a1-m1-cA_2wu8-a1-m2-cA
22 4ihu-a3-m1-cA 200 63 0.1717 0.0850 0.2698 4.7 4ihu-a3-m1-cA_4ihu-a3-m5-cB
23 4ihu-a3-m5-cB 207 63 0.1717 0.0821 0.2698 6.3 4ihu-a3-m1-cA_4ihu-a3-m5-cB, 4ihu-a3-m4-cB_4ihu-a3-m5-cB
24 4ihu-a3-m4-cB 207 63 0.1717 0.0821 0.2698 6.3 4ihu-a3-m4-cB_4ihu-a3-m5-cB
25 1vkn-a1-m1-cB 331 46 0.1717 0.0514 0.3696 6.7 1vkn-a1-m1-cD_1vkn-a1-m1-cB
26 1vkn-a1-m1-cA 331 46 0.1717 0.0514 0.3696 6.7 1vkn-a1-m1-cD_1vkn-a1-m1-cA
27 4jqt-a1-m1-cB 425 20 0.0909 0.0212 0.4500 7.6 4jqt-a1-m1-cA_4jqt-a1-m1-cB
28 4jqt-a1-m1-cA 425 20 0.0909 0.0212 0.4500 7.6 4jqt-a1-m1-cA_4jqt-a1-m1-cB
29 1vkn-a1-m1-cC 327 45 0.1616 0.0489 0.3556 8.1 1vkn-a1-m1-cD_1vkn-a1-m1-cC
30 2bek-a2-m1-cC 244 17 0.1313 0.0533 0.7647 8.1 2bek-a2-m1-cD_2bek-a2-m1-cC
31 2bek-a2-m1-cD 243 17 0.1313 0.0535 0.7647 8.2 2bek-a2-m1-cD_2bek-a2-m1-cC
32 1wcv-a1-m2-c1 243 17 0.1313 0.0535 0.7647 8.2 1wcv-a1-m1-c1_1wcv-a1-m2-c1
33 1wcv-a1-m1-c1 243 17 0.1313 0.0535 0.7647 8.2 1wcv-a1-m1-c1_1wcv-a1-m2-c1
34 7eqc-a1-m1-cE 81 38 0.1010 0.1235 0.2632 8.8 7eqc-a1-m1-cE_7eqc-a1-m1-cI

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Reference:
Jacob Schwartz et al.

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