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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=97)
YTMCSGKFSIDKEMAETQHGTTVVKVKYEGAGAPCKVPIEIRDVNKEKVVGRIISSTPLA
ENTNSVTNIELEPPFGDSYIVIGVGNSALTIHWFRKG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 5b1c-a1-m2-cB 97 97 1.0000 1.0000 1.0000 6.51e-69 5b1c-a1-m1-cB_5b1c-a1-m2-cB
2 5b1c-a1-m1-cB 97 97 1.0000 1.0000 1.0000 6.51e-69 5b1c-a1-m1-cB_5b1c-a1-m2-cB
3 7a3q-a1-m1-cB 366 97 0.9897 0.2623 0.9897 3.20e-65 7a3q-a1-m1-cB_7a3q-a1-m1-cA
4 7a3q-a1-m1-cA 372 96 0.9794 0.2554 0.9896 2.42e-64 7a3q-a1-m1-cB_7a3q-a1-m1-cA
5 4cbf-a1-m9-cE 495 97 0.9691 0.1899 0.9691 9.81e-63 4cbf-a1-m24-cA_4cbf-a1-m9-cE, 4cbf-a1-m9-cA_4cbf-a1-m9-cE
6 4cbf-a1-m9-cC 495 97 0.9691 0.1899 0.9691 9.81e-63 4cbf-a1-m8-cC_4cbf-a1-m9-cC, 4cbf-a1-m9-cA_4cbf-a1-m9-cC
7 4cbf-a1-m9-cA 495 97 0.9691 0.1899 0.9691 9.81e-63 4cbf-a1-m9-cA_4cbf-a1-m9-cC, 4cbf-a1-m9-cA_4cbf-a1-m9-cE
8 4cbf-a1-m8-cC 495 97 0.9691 0.1899 0.9691 9.81e-63 4cbf-a1-m8-cC_4cbf-a1-m9-cC
9 4cbf-a1-m24-cA 495 97 0.9691 0.1899 0.9691 9.81e-63 4cbf-a1-m24-cA_4cbf-a1-m9-cE
10 3irc-a2-m3-cA 104 97 0.5155 0.4808 0.5155 7.16e-36 3irc-a2-m2-cA_3irc-a2-m3-cA
11 3irc-a2-m2-cA 104 97 0.5155 0.4808 0.5155 7.16e-36 3irc-a2-m2-cA_3irc-a2-m3-cA
12 4gsx-a1-m3-cA 390 97 0.5155 0.1282 0.5155 1.76e-32 4gsx-a1-m2-cA_4gsx-a1-m3-cA
13 4gsx-a1-m2-cA 390 97 0.5155 0.1282 0.5155 1.76e-32 4gsx-a1-m2-cA_4gsx-a1-m3-cA
14 7dwu-a1-m9-cC 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwu-a1-m24-cB_7dwu-a1-m9-cC, 7dwu-a1-m9-cA_7dwu-a1-m9-cC
15 7dwu-a1-m9-cB 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwu-a1-m55-cA_7dwu-a1-m9-cB, 7dwu-a1-m9-cA_7dwu-a1-m9-cB
16 7dwu-a1-m9-cA 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwu-a1-m9-cA_7dwu-a1-m9-cB, 7dwu-a1-m9-cA_7dwu-a1-m9-cC
17 7dwu-a1-m55-cA 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwu-a1-m55-cA_7dwu-a1-m9-cB
18 7dwu-a1-m24-cB 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwu-a1-m24-cB_7dwu-a1-m9-cC
19 7dwt-a1-m9-cC 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwt-a1-m24-cA_7dwt-a1-m9-cC, 7dwt-a1-m24-cB_7dwt-a1-m9-cC, 7dwt-a1-m54-cC_7dwt-a1-m9-cC, 7dwt-a1-m9-cA_7dwt-a1-m9-cC
20 7dwt-a1-m9-cA 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwt-a1-m9-cA_7dwt-a1-m9-cC
21 7dwt-a1-m54-cC 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwt-a1-m54-cC_7dwt-a1-m9-cC
22 7dwt-a1-m24-cB 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwt-a1-m24-cB_7dwt-a1-m9-cC
23 7dwt-a1-m24-cA 394 96 0.5052 0.1244 0.5104 1.19e-31 7dwt-a1-m24-cA_7dwt-a1-m9-cC
24 4b03-a1-m9-cC 495 97 0.5155 0.1010 0.5155 1.32e-31 4b03-a1-m8-cC_4b03-a1-m9-cC
25 4b03-a1-m8-cC 495 97 0.5155 0.1010 0.5155 1.32e-31 4b03-a1-m8-cC_4b03-a1-m9-cC
26 4cau-a1-m9-cC 376 96 0.4948 0.1277 0.5000 1.78e-31 4cau-a1-m55-cA_4cau-a1-m9-cC, 4cau-a1-m8-cB_4cau-a1-m9-cC, 4cau-a1-m8-cC_4cau-a1-m9-cC, 4cau-a1-m9-cA_4cau-a1-m9-cC
27 4cau-a1-m9-cB 376 96 0.4948 0.1277 0.5000 1.78e-31 4cau-a1-m24-cA_4cau-a1-m9-cB, 4cau-a1-m54-cB_4cau-a1-m9-cB
28 4cau-a1-m9-cA 376 96 0.4948 0.1277 0.5000 1.78e-31 4cau-a1-m9-cA_4cau-a1-m9-cC
29 4cau-a1-m8-cC 376 96 0.4948 0.1277 0.5000 1.78e-31 4cau-a1-m8-cC_4cau-a1-m9-cC
30 4cau-a1-m8-cB 376 96 0.4948 0.1277 0.5000 1.78e-31 4cau-a1-m8-cB_4cau-a1-m9-cC
31 4cau-a1-m55-cA 376 96 0.4948 0.1277 0.5000 1.78e-31 4cau-a1-m55-cA_4cau-a1-m9-cC
32 4cau-a1-m54-cB 376 96 0.4948 0.1277 0.5000 1.78e-31 4cau-a1-m54-cB_4cau-a1-m9-cB
33 4cau-a1-m24-cA 376 96 0.4948 0.1277 0.5000 1.78e-31 4cau-a1-m24-cA_4cau-a1-m9-cB
34 7a3o-a1-m2-cA 377 97 0.5155 0.1326 0.5155 1.08e-30 7a3o-a1-m1-cA_7a3o-a1-m2-cA
35 7a3o-a1-m1-cA 377 97 0.5155 0.1326 0.5155 1.08e-30 7a3o-a1-m1-cA_7a3o-a1-m2-cA
36 6idk-a1-m9-cC 394 97 0.4742 0.1168 0.4742 8.16e-29 6idk-a1-m55-cC_6idk-a1-m9-cC, 6idk-a1-m9-cA_6idk-a1-m9-cC, 6idk-a1-m9-cB_6idk-a1-m9-cC
37 6idk-a1-m9-cB 394 97 0.4742 0.1168 0.4742 8.16e-29 6idk-a1-m9-cB_6idk-a1-m9-cC
38 6idk-a1-m9-cA 394 97 0.4742 0.1168 0.4742 8.16e-29 6idk-a1-m54-cA_6idk-a1-m9-cA, 6idk-a1-m8-cA_6idk-a1-m9-cA, 6idk-a1-m9-cA_6idk-a1-m9-cC
39 6idk-a1-m8-cA 394 97 0.4742 0.1168 0.4742 8.16e-29 6idk-a1-m8-cA_6idk-a1-m9-cA
40 6idk-a1-m55-cC 394 97 0.4742 0.1168 0.4742 8.16e-29 6idk-a1-m55-cC_6idk-a1-m9-cC
41 6idk-a1-m54-cA 394 97 0.4742 0.1168 0.4742 8.16e-29 6idk-a1-m54-cA_6idk-a1-m9-cA
42 6idl-a1-m9-cC 393 97 0.4742 0.1170 0.4742 8.76e-29 6idl-a1-m10-cA_6idl-a1-m9-cC, 6idl-a1-m54-cC_6idl-a1-m9-cC, 6idl-a1-m9-cA_6idl-a1-m9-cC
43 6idl-a1-m9-cB 393 97 0.4742 0.1170 0.4742 8.76e-29 6idl-a1-m55-cA_6idl-a1-m9-cB, 6idl-a1-m55-cB_6idl-a1-m9-cB
44 6idl-a1-m9-cA 393 97 0.4742 0.1170 0.4742 8.76e-29 6idl-a1-m8-cA_6idl-a1-m9-cA, 6idl-a1-m9-cA_6idl-a1-m9-cC
45 6idl-a1-m8-cA 393 97 0.4742 0.1170 0.4742 8.76e-29 6idl-a1-m8-cA_6idl-a1-m9-cA
46 6idl-a1-m55-cB 393 97 0.4742 0.1170 0.4742 8.76e-29 6idl-a1-m55-cB_6idl-a1-m9-cB
47 6idl-a1-m55-cA 393 97 0.4742 0.1170 0.4742 8.76e-29 6idl-a1-m55-cA_6idl-a1-m9-cB
48 6idl-a1-m54-cC 393 97 0.4742 0.1170 0.4742 8.76e-29 6idl-a1-m54-cC_6idl-a1-m9-cC
49 6idl-a1-m10-cA 393 97 0.4742 0.1170 0.4742 8.76e-29 6idl-a1-m10-cA_6idl-a1-m9-cC
50 3j6u-a1-m9-cE 493 97 0.4742 0.0933 0.4742 2.16e-28 3j6u-a1-m24-cA_3j6u-a1-m9-cE, 3j6u-a1-m54-cE_3j6u-a1-m9-cE
51 3j6u-a1-m9-cC 493 97 0.4742 0.0933 0.4742 2.16e-28 3j6u-a1-m9-cA_3j6u-a1-m9-cC
52 3j6u-a1-m9-cA 493 97 0.4742 0.0933 0.4742 2.16e-28 3j6u-a1-m9-cA_3j6u-a1-m9-cC
53 3j6u-a1-m54-cE 493 97 0.4742 0.0933 0.4742 2.16e-28 3j6u-a1-m54-cE_3j6u-a1-m9-cE
54 3j6u-a1-m24-cA 493 97 0.4742 0.0933 0.4742 2.16e-28 3j6u-a1-m24-cA_3j6u-a1-m9-cE
55 3j6t-a1-m9-cC 493 97 0.4742 0.0933 0.4742 2.16e-28 3j6t-a1-m55-cA_3j6t-a1-m9-cC, 3j6t-a1-m8-cC_3j6t-a1-m9-cC
56 3j6t-a1-m8-cC 493 97 0.4742 0.0933 0.4742 2.16e-28 3j6t-a1-m8-cC_3j6t-a1-m9-cC
57 3j6t-a1-m55-cA 493 97 0.4742 0.0933 0.4742 2.16e-28 3j6t-a1-m55-cA_3j6t-a1-m9-cC
58 6idi-a1-m9-cC 492 97 0.4742 0.0935 0.4742 2.16e-28 6idi-a1-m9-cB_6idi-a1-m9-cC
59 6idi-a1-m9-cB 492 97 0.4742 0.0935 0.4742 2.16e-28 6idi-a1-m9-cA_6idi-a1-m9-cB, 6idi-a1-m9-cB_6idi-a1-m9-cC
60 6idi-a1-m9-cA 492 97 0.4742 0.0935 0.4742 2.16e-28 6idi-a1-m9-cA_6idi-a1-m9-cB
61 7c2s-a1-m9-cB 394 97 0.4742 0.1168 0.4742 3.61e-28 7c2s-a1-m16-cA_7c2s-a1-m9-cB, 7c2s-a1-m6-cB_7c2s-a1-m9-cB
62 7c2s-a1-m6-cB 394 97 0.4742 0.1168 0.4742 3.61e-28 7c2s-a1-m6-cB_7c2s-a1-m9-cB
63 7c2s-a1-m16-cA 394 97 0.4742 0.1168 0.4742 3.61e-28 7c2s-a1-m16-cA_7c2s-a1-m9-cB
64 7a3s-a1-m2-cA 384 97 0.4742 0.1198 0.4742 3.66e-27 7a3s-a1-m1-cA_7a3s-a1-m2-cA
65 7a3s-a1-m1-cA 384 97 0.4742 0.1198 0.4742 3.66e-27 7a3s-a1-m1-cA_7a3s-a1-m2-cA
66 6s94-a1-m1-cA 102 100 0.4124 0.3922 0.4000 3.20e-24 6s94-a1-m1-cA_6s94-a1-m1-cB
67 6s94-a1-m1-cB 103 100 0.4124 0.3883 0.4000 3.40e-24 6s94-a1-m1-cA_6s94-a1-m1-cB
68 7kvb-a1-m9-cC 501 100 0.4227 0.0818 0.4100 3.08e-23 7kvb-a1-m54-cB_7kvb-a1-m9-cC, 7kvb-a1-m9-cA_7kvb-a1-m9-cC, 7kvb-a1-m9-cB_7kvb-a1-m9-cC
69 7kvb-a1-m9-cB 501 100 0.4227 0.0818 0.4100 3.08e-23 7kvb-a1-m10-cA_7kvb-a1-m9-cB, 7kvb-a1-m54-cB_7kvb-a1-m9-cB, 7kvb-a1-m9-cA_7kvb-a1-m9-cB, 7kvb-a1-m9-cB_7kvb-a1-m9-cC
70 7kvb-a1-m9-cA 501 100 0.4227 0.0818 0.4100 3.08e-23 7kvb-a1-m8-cA_7kvb-a1-m9-cA, 7kvb-a1-m9-cA_7kvb-a1-m9-cB, 7kvb-a1-m9-cA_7kvb-a1-m9-cC
71 7kvb-a1-m8-cA 501 100 0.4227 0.0818 0.4100 3.08e-23 7kvb-a1-m8-cA_7kvb-a1-m9-cA
72 7kvb-a1-m54-cB 501 100 0.4227 0.0818 0.4100 3.08e-23 7kvb-a1-m54-cB_7kvb-a1-m9-cB, 7kvb-a1-m54-cB_7kvb-a1-m9-cC
73 7kvb-a1-m10-cA 501 100 0.4227 0.0818 0.4100 3.08e-23 7kvb-a1-m10-cA_7kvb-a1-m9-cB
74 7kva-a1-m9-cC 501 100 0.4227 0.0818 0.4100 2.08e-20 7kva-a1-m54-cB_7kva-a1-m9-cC, 7kva-a1-m9-cA_7kva-a1-m9-cC, 7kva-a1-m9-cB_7kva-a1-m9-cC
75 7kva-a1-m9-cB 501 100 0.4227 0.0818 0.4100 2.08e-20 7kva-a1-m54-cB_7kva-a1-m9-cB, 7kva-a1-m9-cA_7kva-a1-m9-cB, 7kva-a1-m9-cB_7kva-a1-m9-cC
76 7kva-a1-m9-cA 501 100 0.4227 0.0818 0.4100 2.08e-20 7kva-a1-m8-cA_7kva-a1-m9-cA, 7kva-a1-m9-cA_7kva-a1-m9-cB, 7kva-a1-m9-cA_7kva-a1-m9-cC
77 7kva-a1-m8-cA 501 100 0.4227 0.0818 0.4100 2.08e-20 7kva-a1-m8-cA_7kva-a1-m9-cA
78 7kva-a1-m54-cB 501 100 0.4227 0.0818 0.4100 2.08e-20 7kva-a1-m54-cB_7kva-a1-m9-cB, 7kva-a1-m54-cB_7kva-a1-m9-cC
79 7esd-a1-m9-cC 499 97 0.4124 0.0802 0.4124 2.99e-20 7esd-a1-m10-cA_7esd-a1-m9-cC, 7esd-a1-m24-cB_7esd-a1-m9-cC, 7esd-a1-m54-cC_7esd-a1-m9-cC, 7esd-a1-m9-cA_7esd-a1-m9-cC, 7esd-a1-m9-cB_7esd-a1-m9-cC
80 7esd-a1-m9-cB 499 97 0.4124 0.0802 0.4124 2.99e-20 7esd-a1-m9-cA_7esd-a1-m9-cB, 7esd-a1-m9-cB_7esd-a1-m9-cC
81 7esd-a1-m9-cA 499 97 0.4124 0.0802 0.4124 2.99e-20 7esd-a1-m8-cA_7esd-a1-m9-cA, 7esd-a1-m9-cA_7esd-a1-m9-cB, 7esd-a1-m9-cA_7esd-a1-m9-cC
82 7esd-a1-m8-cA 499 97 0.4124 0.0802 0.4124 2.99e-20 7esd-a1-m8-cA_7esd-a1-m9-cA
83 7esd-a1-m54-cC 499 97 0.4124 0.0802 0.4124 2.99e-20 7esd-a1-m54-cC_7esd-a1-m9-cC
84 7esd-a1-m24-cB 499 97 0.4124 0.0802 0.4124 2.99e-20 7esd-a1-m24-cB_7esd-a1-m9-cC
85 7esd-a1-m10-cA 499 97 0.4124 0.0802 0.4124 2.99e-20 7esd-a1-m10-cA_7esd-a1-m9-cC
86 3ixx-a1-m9-cC 400 98 0.4227 0.1025 0.4184 6.84e-20 3ixx-a1-m10-cB_3ixx-a1-m9-cC
87 3ixx-a1-m10-cB 400 98 0.4227 0.1025 0.4184 6.84e-20 3ixx-a1-m10-cB_3ixx-a1-m9-cC
88 2of6-a1-m9-cC 400 98 0.4227 0.1025 0.4184 6.84e-20 2of6-a1-m9-cA_2of6-a1-m9-cC
89 2of6-a1-m9-cA 400 98 0.4227 0.1025 0.4184 6.84e-20 2of6-a1-m9-cA_2of6-a1-m9-cC
90 4fg0-a1-m3-cA 379 96 0.3918 0.1003 0.3958 1.46e-19 4fg0-a1-m2-cA_4fg0-a1-m3-cA
91 4fg0-a1-m2-cA 379 96 0.3918 0.1003 0.3958 1.46e-19 4fg0-a1-m2-cA_4fg0-a1-m3-cA
92 1ei5-a1-m2-cA 518 34 0.1237 0.0232 0.3529 3.1 1ei5-a1-m1-cA_1ei5-a1-m2-cA
93 1ei5-a1-m1-cA 518 34 0.1237 0.0232 0.3529 3.1 1ei5-a1-m1-cA_1ei5-a1-m2-cA
94 1t11-a2-m2-cA 376 56 0.1959 0.0505 0.3393 5.5 1t11-a2-m2-cB_1t11-a2-m2-cA
95 1t11-a2-m1-cA 376 56 0.1959 0.0505 0.3393 5.5 1t11-a2-m2-cB_1t11-a2-m1-cA
96 2pw6-a1-m2-cA 234 74 0.2062 0.0855 0.2703 6.5 2pw6-a1-m1-cA_2pw6-a1-m2-cA
97 2pw6-a1-m1-cA 234 74 0.2062 0.0855 0.2703 6.5 2pw6-a1-m1-cA_2pw6-a1-m2-cA

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Reference:
Jacob Schwartz et al.

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