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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=94)
YTQRDNQKTLAVYFEEINRDVEYLSGRLSEKELKDKYRYYGRGYVRITDKDGQVITYEDG
SVQDKTVFLTNEGANKLGWKLEFLIDEKFEEEIL

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3fn2-a1-m3-cB 94 94 1.0000 1.0000 1.0000 2.14e-63 3fn2-a1-m2-cB_3fn2-a1-m3-cB, 3fn2-a1-m3-cA_3fn2-a1-m3-cB
2 3fn2-a1-m3-cA 94 94 1.0000 1.0000 1.0000 2.14e-63 3fn2-a1-m3-cA_3fn2-a1-m3-cB
3 3fn2-a1-m2-cB 94 94 1.0000 1.0000 1.0000 2.14e-63 3fn2-a1-m2-cB_3fn2-a1-m3-cB
4 2ch5-a2-m1-cD 342 52 0.1809 0.0497 0.3269 0.15 2ch5-a2-m1-cC_2ch5-a2-m1-cD
5 2ch5-a2-m1-cC 342 52 0.1809 0.0497 0.3269 0.15 2ch5-a2-m1-cC_2ch5-a2-m1-cD
6 7x2u-a1-m1-cB 540 42 0.1277 0.0222 0.2857 1.4 7x2u-a1-m1-cB_7x2u-a1-m1-cA
7 7x2u-a1-m1-cA 541 42 0.1277 0.0222 0.2857 1.4 7x2u-a1-m1-cB_7x2u-a1-m1-cA
8 1fte-a1-m1-cB 116 43 0.1702 0.1379 0.3721 1.4 1fte-a1-m1-cA_1fte-a1-m1-cB
9 1fte-a1-m1-cA 116 43 0.1702 0.1379 0.3721 1.4 1fte-a1-m1-cA_1fte-a1-m1-cB
10 6iru-a2-m1-cC 202 46 0.1489 0.0693 0.3043 2.1 6iru-a2-m1-cB_6iru-a2-m1-cC
11 6iru-a2-m1-cB 201 46 0.1489 0.0697 0.3043 2.2 6iru-a2-m1-cB_6iru-a2-m1-cC
12 1wov-a1-m1-cB 242 57 0.1809 0.0702 0.2982 2.2 1wov-a1-m1-cB_1wov-a1-m1-cA
13 1wov-a1-m1-cA 244 57 0.1809 0.0697 0.2982 2.3 1wov-a1-m1-cB_1wov-a1-m1-cA
14 5znm-a1-m1-cB 357 32 0.1277 0.0336 0.3750 3.2 5znm-a1-m1-cB_5znm-a1-m1-cA
15 5znm-a1-m1-cA 358 32 0.1277 0.0335 0.3750 3.2 5znm-a1-m1-cB_5znm-a1-m1-cA
16 7q97-a1-m1-cB 1047 35 0.1383 0.0124 0.3714 4.4 7q97-a1-m1-cA_7q97-a1-m1-cB
17 7q97-a1-m1-cA 1047 35 0.1383 0.0124 0.3714 4.4 7q97-a1-m1-cA_7q97-a1-m1-cB
18 7pfp-a1-m1-cC 420 36 0.1170 0.0262 0.3056 5.6 7pfp-a1-m1-cC_7pfp-a1-m1-cA
19 7pfp-a1-m1-cA 563 36 0.1170 0.0195 0.3056 5.8 7pfp-a1-m1-cC_7pfp-a1-m1-cA
20 7d4m-a1-m1-cB 442 46 0.1596 0.0339 0.3261 6.6 7d4m-a1-m1-cB_7d4m-a1-m1-cA
21 5gkd-a1-m1-cD 726 43 0.0957 0.0124 0.2093 7.0 5gkd-a1-m1-cA_5gkd-a1-m1-cD
22 5gkd-a1-m1-cA 726 43 0.0957 0.0124 0.2093 7.0 5gkd-a1-m1-cA_5gkd-a1-m1-cD
23 7d4m-a1-m1-cA 444 46 0.1596 0.0338 0.3261 7.0 7d4m-a1-m1-cB_7d4m-a1-m1-cA

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Reference:
Jacob Schwartz et al.

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