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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=93)
YVPDMGDLIWVDFHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGGVALADQV
KSIAWRARGATKKGTVAPEELQLIKAKINVLIG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3nfc-a2-m1-cC 93 93 1.0000 1.0000 1.0000 1.26e-66 3nfc-a2-m1-cB_3nfc-a2-m1-cC
2 3nfc-a2-m1-cB 92 93 0.9892 1.0000 0.9892 1.73e-63 3nfc-a2-m1-cB_3nfc-a2-m1-cC
3 7d2q-a1-m1-cA 100 98 0.4624 0.4300 0.4388 2.26e-23 7d2q-a1-m1-cA_7d2q-a1-m1-cG
4 7d2n-a1-m1-cB 108 105 0.4624 0.3981 0.4095 2.47e-22 7d2n-a1-m1-cC_7d2n-a1-m1-cB
5 7d2n-a1-m1-cC 100 98 0.4516 0.4200 0.4286 2.70e-22 7d2n-a1-m1-cC_7d2n-a1-m1-cB
6 7d2p-a1-m1-cB 111 108 0.4624 0.3874 0.3981 6.83e-22 7d2p-a1-m1-cA_7d2p-a1-m1-cB
7 7d2p-a1-m1-cA 111 108 0.4624 0.3874 0.3981 6.83e-22 7d2p-a1-m1-cA_7d2p-a1-m1-cB
8 7d2q-a1-m1-cG 110 108 0.4624 0.3909 0.3981 7.84e-22 7d2q-a1-m1-cA_7d2q-a1-m1-cG
9 7bye-a2-m1-cE 100 98 0.4516 0.4200 0.4286 1.29e-19 7bye-a2-m1-cF_7bye-a2-m1-cE
10 7bye-a2-m1-cF 98 97 0.4409 0.4184 0.4227 1.44e-18 7bye-a2-m1-cF_7bye-a2-m1-cE
11 1m1f-a1-m1-cB 105 62 0.1828 0.1619 0.2742 1.93e-04 1m1f-a1-m1-cB_1m1f-a1-m1-cA
12 1m1f-a1-m1-cA 107 64 0.2151 0.1869 0.3125 2.88e-04 1m1f-a1-m1-cB_1m1f-a1-m1-cA
13 7ewj-a2-m1-cD 110 92 0.2366 0.2000 0.2391 0.58 7ewj-a2-m1-cD_7ewj-a2-m1-cE
14 7ewj-a2-m1-cE 113 92 0.2366 0.1947 0.2391 0.60 7ewj-a2-m1-cD_7ewj-a2-m1-cE
15 4ous-a1-m3-cA 132 28 0.1075 0.0758 0.3571 5.6 4ous-a1-m2-cA_4ous-a1-m3-cA
16 4ous-a1-m2-cA 132 28 0.1075 0.0758 0.3571 5.6 4ous-a1-m2-cA_4ous-a1-m3-cA
17 4oul-a1-m1-cC 131 28 0.1183 0.0840 0.3929 5.7 4oul-a1-m1-cC_4oul-a1-m1-cB
18 4oul-a1-m1-cB 132 28 0.1183 0.0833 0.3929 6.0 4oul-a1-m1-cC_4oul-a1-m1-cB
19 4eo3-a1-m1-cB 321 25 0.1505 0.0436 0.5600 7.8 4eo3-a1-m1-cA_4eo3-a1-m1-cB
20 4eo3-a1-m1-cA 321 25 0.1505 0.0436 0.5600 7.8 4eo3-a1-m1-cA_4eo3-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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