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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

HomodimerDB
>protein (length=92)
YVPDMGDLIWVDFRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGGVALADQVK
SIAWRARGATKKGTVAPEELQLIKAKINVLIG

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Dimers
1 3nfc-a2-m1-cB 92 92 1.0000 1.0000 1.0000 3.64e-65 3nfc-a2-m1-cB_3nfc-a2-m1-cC
2 3nfc-a2-m1-cC 93 93 1.0000 0.9892 0.9892 1.71e-63 3nfc-a2-m1-cB_3nfc-a2-m1-cC
3 7d2q-a1-m1-cA 100 97 0.4674 0.4300 0.4433 3.07e-25 7d2q-a1-m1-cA_7d2q-a1-m1-cG
4 7d2n-a1-m1-cC 100 97 0.4565 0.4200 0.4330 5.75e-24 7d2n-a1-m1-cC_7d2n-a1-m1-cB
5 7d2n-a1-m1-cB 108 105 0.4674 0.3981 0.4095 2.74e-22 7d2n-a1-m1-cC_7d2n-a1-m1-cB
6 7d2p-a1-m1-cB 111 108 0.4674 0.3874 0.3981 7.26e-22 7d2p-a1-m1-cA_7d2p-a1-m1-cB
7 7d2p-a1-m1-cA 111 108 0.4674 0.3874 0.3981 7.26e-22 7d2p-a1-m1-cA_7d2p-a1-m1-cB
8 7d2q-a1-m1-cG 110 108 0.4674 0.3909 0.3981 7.30e-22 7d2q-a1-m1-cA_7d2q-a1-m1-cG
9 7bye-a2-m1-cF 98 96 0.4457 0.4184 0.4271 6.68e-20 7bye-a2-m1-cF_7bye-a2-m1-cE
10 7bye-a2-m1-cE 100 98 0.4565 0.4200 0.4286 2.12e-19 7bye-a2-m1-cF_7bye-a2-m1-cE
11 1m1f-a1-m1-cB 105 62 0.1848 0.1619 0.2742 2.34e-04 1m1f-a1-m1-cB_1m1f-a1-m1-cA
12 1m1f-a1-m1-cA 107 64 0.2174 0.1869 0.3125 3.18e-04 1m1f-a1-m1-cB_1m1f-a1-m1-cA
13 7ewj-a2-m1-cD 110 76 0.2174 0.1818 0.2632 1.2 7ewj-a2-m1-cD_7ewj-a2-m1-cE
14 7ewj-a2-m1-cE 113 76 0.2174 0.1770 0.2632 1.3 7ewj-a2-m1-cD_7ewj-a2-m1-cE
15 4eo3-a1-m1-cB 321 25 0.1522 0.0436 0.5600 7.6 4eo3-a1-m1-cA_4eo3-a1-m1-cB
16 4eo3-a1-m1-cA 321 25 0.1522 0.0436 0.5600 7.6 4eo3-a1-m1-cA_4eo3-a1-m1-cB

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Reference:
Jacob Schwartz et al.

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