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Protein Structure Prediction of E. coli Genome - TBM Targets
This page contains results of template-based modeling (TBM) for 3784 E. coli gene sequences
which have homologous templates detected by
LOMETS
in the
PDB until Dec. 2012.
The models were generated by
I-TASSER
pipeline.
Please go to
http://zhanglab.dcmb.med.umich.edu/QUARK/ecoli to view the structure modeling results
for other 495 proteins in E. coli, which are built by ab initio structure modeling.
Explanations:
- AC: UniProt primary accession number.
- TM Helix: the average number of amino acids in transmembrane helix predicted
by TMHMM2.0 and MEMSAT3. High number (> 13 amino acids) probably means the target is a transmembrane protein.
- TM-score: the estimated backbone accuracy of the best in top 5 models to native.
- Native: link to the experimental structure in the PDB.
References:
S. Wu, Y. Zhang. LOMETS: A local meta-threading-server for protein structure prediction. Nucleic Acids Research, vol. 35, pp. 3375-3382, 2007.
A. Roy, A. Kucukural, Y. Zhang. I-TASSER: a unified platform for automated protein structure and function prediction. Nature Protocols, vol. 5, pp. 725-738, 2010.
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