StarFunc result for job id P42766

User Input

>input (123 residues)
MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV
INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA
VKA

Proteins with similar structure

Top structural analogs (as identified by Foldseek and TM-align)

Rank	Structure template	TM-score1	TM-score2	Foldseek E-value	Length	ID1	ID2	Download	Description
1	AFDB:P17078	0.998	0.998	9.882E-16	123	0.984	0.984	P17078.pdb.gz	RL35_RAT Large ribosomal subunit protein uL29 OS=Rattus norvegicus OX=10116 GN=Rpl35 PE=1 SV=3
2	PDB:4v6xCh	0.952	0.952	3.000E-14	123	1.000	1.000	4v6xCh.pdb.gz	Structures of the human and Drosophila 80S ribosome.
3	AFDB:O80626	0.991	0.991	1.013E-12	123	0.634	0.634	O80626.pdb.gz	RL352_ARATH Large ribosomal subunit protein uL29y OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1
4	AFDB:Q8MT59	0.944	0.944	2.427E-12	123	0.650	0.650	Q8MT59.pdb.gz	Q8MT59_DROME Large ribosomal subunit protein uL29 OS=Drosophila melanogaster OX=7227 GN=RpL35 PE=2 SV=1
5	AFDB:O74904	0.961	0.969	1.314E-11	122	0.545	0.549	O74904.pdb.gz	RL35_SCHPO Large ribosomal subunit protein uL29 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl35 PE=1 SV=1
6	AFDB:F4KDR2	0.957	0.811	1.134E-10	146	0.634	0.534	F4KDR2.pdb.gz	F4KDR2_ARATH Ribosomal L29 family protein OS=Arabidopsis thaliana OX=3702 GN=At5g02610 PE=1 SV=1
7	PDB:4v6wCh	0.953	0.953	1.765E-10	123	0.659	0.659	4v6wCh.pdb.gz	Structures of the human and Drosophila 80S ribosome.
8	AFDB:P0CX84	0.940	0.963	3.637E-10	120	0.561	0.575	P0CX84.pdb.gz	RL35A_YEAST Large ribosomal subunit protein uL29A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL35A PE=1 SV=1
9	AFDB:Q6FNU0	0.916	0.938	7.318E-10	120	0.537	0.550	Q6FNU0.pdb.gz	Q6FNU0_CANGA Candida glabrata strain CBS138 chromosome J complete sequence OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=CAGL0J09086g PE=3 SV=1
10	AFDB:Q38FW8	0.935	0.907	1.166E-9	127	0.496	0.480	Q38FW8.pdb.gz	Q38FW8_TRYB2 60S ribosomal protein L35, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb09.160.0700 PE=1 SV=1
11	PDB:5apnh	0.888	0.917	3.651E-9	119	0.545	0.563	5apnh.pdb.gz	Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation.
12	PDB:4v8mBk	0.584	0.825	5.608E-4	84	0.325	0.476	4v8mBk.pdb.gz	High-Resolution Cryo-Electron Microscopy Structure of the Trypanosoma Brucei Ribosome.
13	PDB:7odrY	0.498	0.355	2.263E-1	181	0.163	0.110	7odrY.pdb.gz	Stepwise maturation of the peptidyl transferase region of human mitoribosomes.
14	AFDB:P0A7M6	0.460	0.871	2.457E-1	63	0.187	0.365	P0A7M6.pdb.gz	RL29_ECOLI Large ribosomal subunit protein uL29 OS=Escherichia coli (strain K12) OX=83333 GN=rpmC PE=1 SV=1
15	AFDB:Q9HD33	0.503	0.268	2.604E-1	250	0.163	0.080	Q9HD33.pdb.gz	RM47_HUMAN Large ribosomal subunit protein uL29m OS=Homo sapiens OX=9606 GN=MRPL47 PE=1 SV=2
16	PDB:3j6bT	0.489	0.304	3.823E-1	209	0.106	0.062	3j6bT.pdb.gz	Structure of the yeast mitochondrial large ribosomal subunit.
17	PDB:6yxxA2	0.396	0.127	1.226	463	0.122	0.032	6yxxA2.pdb.gz	Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis.
18	PDB:6ql7M	0.340	0.364	1.843	113	0.089	0.097	6ql7M.pdb.gz
19	PDB:6gg1A	0.291	0.257	3.930	145	0.073	0.062	6gg1A.pdb.gz
20	PDB:6xtxA	0.441	0.287	4.165	196	0.122	0.077	6xtxA.pdb.gz	CryoEM structures of human CMG-ATP gamma S-DNA and CMG-AND-1 complexes.

(a)	The query structure is shown in cartoon, while the structural analog is displayed using a backbone trace.
(b)	Ranking of proteins is based on E-value of Foldseek alignment.
(c)	TM-score1 and ID1 are TM-score and sequence identity normalized by query sequence length.
(d)	TM-score2 and ID2 are TM-score and sequence identity normalized by template sequence length.

Proteins with similar sequence

Top sequence homologs in UniProt

Rank	Template	E-value	Bit-score	Length	ID1	ID2	Description
1	P42766	6.82e-82	237	123	1.000	1.000	RL35_HUMAN Large ribosomal subunit protein uL29 OS=Homo sapiens OX=9606 GN=RPL35 PE=1 SV=2
2	Q29361	9.92e-81	234	123	0.984	0.984	RL35_PIG Large ribosomal subunit protein uL29 OS=Sus scrofa OX=9823 GN=RPL35 PE=1 SV=3
3	P17078	7.81e-80	232	123	0.984	0.984	RL35_RAT Large ribosomal subunit protein uL29 OS=Rattus norvegicus OX=10116 GN=Rpl35 PE=1 SV=3
4	Q6ZWV7	7.81e-80	232	123	0.984	0.984	RL35_MOUSE Large ribosomal subunit protein uL29 OS=Mus musculus OX=10090 GN=Rpl35 PE=1 SV=1
5	Q8JHJ1	2.66e-75	221	123	0.927	0.927	RL35_DANRE Large ribosomal subunit protein uL29 OS=Danio rerio OX=7955 GN=rpl35 PE=1 SV=3
6	O80626	1.10e-46	148	123	0.634	0.634	RL352_ARATH Large ribosomal subunit protein uL29y OS=Arabidopsis thaliana OX=3702 GN=RPL35B PE=2 SV=1
7	Q9M3D2	1.50e-46	148	123	0.626	0.626	RL353_ARATH Large ribosomal subunit protein uL29x OS=Arabidopsis thaliana OX=3702 GN=RPL35C PE=2 SV=1
8	Q9SF53	2.96e-46	147	123	0.634	0.634	RL351_ARATH Large ribosomal subunit protein uL29z OS=Arabidopsis thaliana OX=3702 GN=RPL35A PE=2 SV=1
9	Q9W499	1.48e-45	145	123	0.659	0.659	Q9W499_DROME Large ribosomal subunit protein uL29 OS=Drosophila melanogaster OX=7227 GN=RpL35 PE=1 SV=2
10	Q8MT59	4.14e-45	144	123	0.650	0.650	Q8MT59_DROME Large ribosomal subunit protein uL29 OS=Drosophila melanogaster OX=7227 GN=RpL35 PE=2 SV=1
11	F4KDR2	7.36e-42	137	146	0.642	0.541	F4KDR2_ARATH Ribosomal L29 family protein OS=Arabidopsis thaliana OX=3702 GN=At5g02610 PE=1 SV=1
12	O74904	9.95e-38	125	122	0.545	0.549	RL35_SCHPO Large ribosomal subunit protein uL29 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl35 PE=1 SV=1
13	P0CX84	4.69e-36	121	120	0.561	0.575	RL35A_YEAST Large ribosomal subunit protein uL29A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL35A PE=1 SV=1
14	P0CX85	4.69e-36	121	120	0.561	0.575	RL35B_YEAST Large ribosomal subunit protein uL29B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL35B PE=1 SV=1
15	Q6FNU0	1.12e-33	115	120	0.537	0.550	Q6FNU0_CANGA Candida glabrata strain CBS138 chromosome J complete sequence OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=CAGL0J09086g PE=3 SV=1
16	Q38FW8	5.00e-28	101	127	0.488	0.472	Q38FW8_TRYB2 60S ribosomal protein L35, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb09.160.0700 PE=1 SV=1
17	E1JJB8	0.016	36.2	1493	0.203	0.017	E1JJB8_DROME Protostome-specific GEF, isoform C OS=Drosophila melanogaster OX=7227 GN=PsGEF PE=4 SV=1
18	Q9W4Y9	0.019	36.2	1529	0.203	0.016	Q9W4Y9_DROME Protostome-specific GEF, isoform A OS=Drosophila melanogaster OX=7227 GN=PsGEF PE=4 SV=1
19	M9PGC1	0.026	35.8	2033	0.203	0.012	M9PGC1_DROME Protostome-specific GEF, isoform G OS=Drosophila melanogaster OX=7227 GN=PsGEF PE=4 SV=1
20	M9PGV0	0.026	35.8	2006	0.203	0.012	M9PGV0_DROME Protostome-specific GEF, isoform H OS=Drosophila melanogaster OX=7227 GN=PsGEF PE=4 SV=1

(a)	Ranking of proteins is based on the E-value of a BLASTp alignment.
(b)	ID1 and ID2 are sequence identities normalized by the query and template sequence lengths, respectively.

Pfam families

Top Pfam family matches

Rank	Pfam family	E-value	Score	Description
1	PF00831 Ribosomal_L29	7.1e-17	72.4	Ribosomal L29 protein

(a)	Ranking of Pfam families is based on the E-value provided by HMMsearch.

Protein-protein interaction (PPI) partners

Top PPI partners to 225400.XP_006768646.1

Rank	PPI partner	STRING score	Description
1	225400.XP_006753810.1	0.999	60S ribosomal protein L21 isoform X1
2	225400.XP_006754668.1	0.999	60S ribosomal protein L38 isoform X1
3	225400.XP_006754722.1	0.999	60S ribosomal protein L15 isoform X1
4	225400.XP_006758247.1	0.999	60S ribosomal protein L5 isoform X1
5	225400.XP_006759039.1	0.999	40S ribosomal protein S5
6	225400.XP_006759352.1	0.999	60S ribosomal protein L9
7	225400.XP_006761139.1	0.999	40S ribosomal protein S19
8	225400.XP_006761155.1	0.999	60S ribosomal protein L18a
9	225400.XP_006762239.1	0.999	60S ribosomal protein L13 isoform X1
10	225400.XP_006766010.1	0.999	60S ribosomal protein L13a
11	225400.XP_006767387.1	0.999	60S ribosomal protein L7
12	225400.XP_006768997.1	0.999	60S ribosomal protein L6
13	225400.XP_006769211.1	0.999	40S ribosomal protein S18
14	225400.XP_006772017.1	0.999	40S ribosomal protein S16
15	225400.XP_006773964.1	0.999	60S ribosomal protein L27
16	225400.XP_006774353.1	0.999	60S ribosomal protein L23
17	225400.XP_006774357.1	0.999	60S ribosomal protein L19
18	225400.XP_006775080.1	0.999	Ribosomal protein L35a
19	225400.XP_006775182.1	0.999	60S ribosomal protein L8
20	225400.XP_006775480.1	0.999	60S ribosomal protein L31

A higher STRING score indicates a greater likelihood of interaction.
The query and PPI partners are shown as grey oval and white rectangles, respectively.
Interactions between query and PPI partners are shown by solid black lines. Interactions among PPI partners are by dashed grey lines.
Values in the rectangles are the STRING scores between query and each corresponding PPI partner

Predicted Gene Ontology (GO) Terms

GO term	C-score	Name
GO:0005488	1.000	binding
GO:0003735	1.000	structural constituent of ribosome
GO:0003723	0.994	RNA binding
GO:0003729	0.934	mRNA binding
GO:0005515	0.890	protein binding
GO:0043021	0.302	ribonucleoprotein complex binding

C-score is the confidence score of a predicted GO term. Its value ranges from (0,1], where a higher value indicates a higher confidence prediction.
If a child GO term and its parent term have the same C-score, only the child term is shown in this table.

The graph shows the predicted terms for the Molecular Function (MF) GO aspect. GO terms shown in the table are colored by C-score in the graph:

[0.3,0.4)

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

GO term	C-score	Name
GO:0009987	0.999	cellular process
GO:0044238	0.993	primary metabolic process
GO:0043170	0.988	macromolecule metabolic process
GO:0034641	0.987	cellular nitrogen compound metabolic process
GO:0006412	0.976	translation
GO:0002181	0.960	cytoplasmic translation
GO:0065007	0.752	biological regulation
GO:0050789	0.669	regulation of biological process
GO:0050794	0.574	regulation of cellular process
GO:0050896	0.461	response to stimulus

C-score is the confidence score of a predicted GO term. Its value ranges from (0,1], where a higher value indicates a higher confidence prediction.
If a child GO term and its parent term have the same C-score, only the child term is shown in this table.

The graph shows the predicted terms for the Biological Process (BP) GO aspect. GO terms shown in the table are colored by C-score in the graph:

[0.3,0.4)

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

GO term	C-score	Name
GO:0015934	0.999	large ribosomal subunit
GO:0022626	0.997	cytosolic ribosome
GO:0022625	0.979	cytosolic large ribosomal subunit
GO:0043231	0.959	intracellular membrane-bounded organelle
GO:0070013	0.937	intracellular organelle lumen
GO:0016020	0.827	membrane
GO:0005634	0.789	nucleus
GO:0031981	0.693	nuclear lumen
GO:0012505	0.381	endomembrane system
GO:0005654	0.320	nucleoplasm

C-score is the confidence score of a predicted GO term. Its value ranges from (0,1], where a higher value indicates a higher confidence prediction.
If a child GO term and its parent term have the same C-score, only the child term is shown in this table.

The graph shows the predicted terms for the Cellular Component (CC) GO aspect. GO terms shown in the table are colored by C-score in the graph:

[0.3,0.4)

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Predicted reactions (EC numbers and Rhea reactions)

Reaction	C-score	Name

[back to server]