StarFunc result for job id P62891

User Input

>input (51 residues)
MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL

Proteins with similar structure

Top structural analogs (as identified by Foldseek and TM-align)

Rank	Structure template	TM-score1	TM-score2	Foldseek E-value	Length	ID1	ID2	Download	Description
1	AFDB:P62891	1.000	1.000	4.446E-9	51	1.000	1.000	P62891.pdb.gz	RL39_HUMAN Large ribosomal subunit protein eL39 OS=Homo sapiens OX=9606 GN=RPL39 PE=1 SV=2
2	PDB:5aj0Al	0.923	0.940	8.129E-8	50	0.980	1.000	5aj0Al.pdb.gz	Structural Snapshots of Actively Translating Human Ribosomes
3	AFDB:O16130	0.980	0.980	2.784E-7	51	0.725	0.725	O16130.pdb.gz	RL39_DROME Large ribosomal subunit protein eL39 OS=Drosophila melanogaster OX=7227 GN=RpL39 PE=1 SV=2
4	AFDB:P04650	0.986	0.986	5.753E-7	51	0.627	0.627	P04650.pdb.gz	RL39_YEAST Large ribosomal subunit protein eL39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL39 PE=1 SV=3
5	AFDB:P51424	0.973	0.973	7.152E-7	51	0.706	0.706	P51424.pdb.gz	RL391_ARATH Large ribosomal subunit protein eL39z/eL39x OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2
6	AFDB:C0H4H3	0.958	0.958	1.189E-6	51	0.647	0.647	C0H4H3.pdb.gz	C0H4H3_PLAF7 60S ribosomal protein L39 OS=Plasmodium falciparum (isolate 3D7) OX=36329 GN=PF3D7_0611700 PE=1 SV=1
7	AFDB:Q57UJ8	0.957	0.957	3.531E-6	51	0.608	0.608	Q57UJ8.pdb.gz	Q57UJ8_TRYB2 60S ribosomal protein L39, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb08.5H5.400 PE=1 SV=1
8	PDB:4v6wCl	0.858	0.873	5.193E-5	50	0.706	0.720	4v6wCl.pdb.gz	Structures of the human and Drosophila 80S ribosome.
9	PDB:4v8mBq	0.844	0.859	8.027E-5	50	0.588	0.600	4v8mBq.pdb.gz	High-Resolution Cryo-Electron Microscopy Structure of the Trypanosoma Brucei Ribosome.
10	PDB:3j79e	0.794	0.929	2.104E-3	43	0.549	0.651	3j79e.pdb.gz	Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine.
11	PDB:7ttlC	0.212	0.031	6.635	617	0.118	0.010	7ttlC.pdb.gz	Helical remodeling augments 5-lipoxygenase activity in the synthesis of proinflammatory mediators.
12	PDB:7ttjB	0.206	0.031	7.671	590	0.118	0.010	7ttjB.pdb.gz	Helical remodeling augments 5-lipoxygenase activity in the synthesis of proinflammatory mediators.

(a)	The query structure is shown in cartoon, while the structural analog is displayed using a backbone trace.
(b)	Ranking of proteins is based on E-value of Foldseek alignment.
(c)	TM-score1 and ID1 are TM-score and sequence identity normalized by query sequence length.
(d)	TM-score2 and ID2 are TM-score and sequence identity normalized by template sequence length.

Proteins with similar sequence

Top sequence homologs in UniProt

Rank	Template	E-value	Bit-score	Length	ID1	ID2	Description
1	P62891	6.76e-31	103	51	1.000	1.000	RL39_HUMAN Large ribosomal subunit protein eL39 OS=Homo sapiens OX=9606 GN=RPL39 PE=1 SV=2
2	P62892	6.76e-31	103	51	1.000	1.000	RL39_MOUSE Large ribosomal subunit protein eL39 OS=Mus musculus OX=10090 GN=Rpl39 PE=1 SV=2
3	P62893	6.76e-31	103	51	1.000	1.000	RL39_RAT Large ribosomal subunit protein eL39 OS=Rattus norvegicus OX=10116 GN=Rpl39 PE=1 SV=2
4	Q96EH5	6.78e-28	95.5	51	0.922	0.922	RL39L_HUMAN Ribosomal protein eL39-like 2 OS=Homo sapiens OX=9606 GN=RPL39L PE=1 SV=3
5	Q8L8W6	4.47e-21	78.6	51	0.725	0.725	RL392_ARATH Large ribosomal subunit protein eL39y OS=Arabidopsis thaliana OX=3702 GN=RPL39B PE=3 SV=1
6	P51424	1.99e-20	76.6	51	0.706	0.706	RL391_ARATH Large ribosomal subunit protein eL39z/eL39x OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2
7	O16130	4.25e-17	68.6	51	0.725	0.725	RL39_DROME Large ribosomal subunit protein eL39 OS=Drosophila melanogaster OX=7227 GN=RpL39 PE=1 SV=2
8	C0H4H3	5.54e-17	68.2	51	0.647	0.647	C0H4H3_PLAF7 60S ribosomal protein L39 OS=Plasmodium falciparum (isolate 3D7) OX=36329 GN=PF3D7_0611700 PE=1 SV=1
9	P04650	7.84e-15	62.8	51	0.627	0.627	RL39_YEAST Large ribosomal subunit protein eL39 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL39 PE=1 SV=3
10	Q57UJ8	1.31e-11	54.7	51	0.451	0.451	Q57UJ8_TRYB2 60S ribosomal protein L39, putative OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb08.5H5.400 PE=1 SV=1
11	Q8U1S6	1.2	28.1	871	0.235	0.014	CMR2_PYRFU CRISPR system Cmr subunit Cmr2 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=cmr2 PE=1 SV=1
12	Q97IJ0	2.9	26.9	411	0.157	0.019	Q97IJ0_CLOAB Predicted GTPase with uncharacterized domain, ortholog of T.maritima (4980952) OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) OX=272562 GN=CA_C1651 PE=1 SV=1
13	Q7K7W5	6.7	25.8	628	0.255	0.021	Q7K7W5_DROME Adipose protein OS=Drosophila melanogaster OX=7227 GN=adp PE=2 SV=1
14	P43572	7.1	25.8	832	0.373	0.023	EPL1_YEAST Enhancer of polycomb-like protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=EPL1 PE=1 SV=1

(a)	Ranking of proteins is based on the E-value of a BLASTp alignment.
(b)	ID1 and ID2 are sequence identities normalized by the query and template sequence lengths, respectively.

Pfam families

Top Pfam family matches

Rank	Pfam family	E-value	Score	Description
1	PF00832 Ribosomal_L39	1.8e-20	83.6	Ribosomal L39 protein

(a)	Ranking of Pfam families is based on the E-value provided by HMMsearch.

Protein-protein interaction (PPI) partners

Top PPI partners to 59463.ENSMLUP00000018203

Rank	PPI partner	STRING score	Description
1	59463.ENSMLUP00000003312	0.999	Ribosomal protein L30
2	59463.ENSMLUP00000015054	0.999	Ribosomal protein L8
3	59463.ENSMLUP00000000075	0.998	Ribosomal protein L10a
4	59463.ENSMLUP00000000315	0.998	Ribosomal protein S21
5	59463.ENSMLUP00000004250	0.998	Ribosomal protein L7a
6	59463.ENSMLUP00000006114	0.998	Ribosomal protein L18a
7	59463.ENSMLUP00000008081	0.998	Ribosomal protein L11
8	59463.ENSMLUP00000008469	0.998	Ribosomal protein L18
9	59463.ENSMLUP00000011425	0.998	Ribosomal protein L19
10	59463.ENSMLUP00000017294	0.998	Ribosomal protein S28
11	59463.ENSMLUP00000021354	0.998	Uncharacterized protein
12	59463.ENSMLUP00000012638	0.997	Belongs to the eukaryotic ribosomal protein eL42 family.
13	59463.ENSMLUP00000012684	0.997	Uncharacterized protein
14	59463.ENSMLUP00000013144	0.997	Uncharacterized protein
15	59463.ENSMLUP00000016501	0.997	Ribosomal protein L38
16	59463.ENSMLUP00000018457	0.997	Belongs to the universal ribosomal protein uS12 family.
17	59463.ENSMLUP00000018655	0.997	Uncharacterized protein
18	59463.ENSMLUP00000022344	0.997	Uncharacterized protein
19	59463.ENSMLUP00000004508	0.996	Ribosomal protein L13a
20	59463.ENSMLUP00000012618	0.996	Ribosomal protein S29

A higher STRING score indicates a greater likelihood of interaction.
The query and PPI partners are shown as grey oval and white rectangles, respectively.
Interactions between query and PPI partners are shown by solid black lines. Interactions among PPI partners are by dashed grey lines.
Values in the rectangles are the STRING scores between query and each corresponding PPI partner

Predicted Gene Ontology (GO) Terms

GO term	C-score	Name
GO:0003735	1.000	structural constituent of ribosome
GO:0005515	0.998	protein binding
GO:0003676	0.985	nucleic acid binding
GO:0003723	0.979	RNA binding

C-score is the confidence score of a predicted GO term. Its value ranges from (0,1], where a higher value indicates a higher confidence prediction.
If a child GO term and its parent term have the same C-score, only the child term is shown in this table.

The graph shows the predicted terms for the Molecular Function (MF) GO aspect. GO terms shown in the table are colored by C-score in the graph:

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[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

GO term	C-score	Name
GO:0006412	0.997	translation
GO:0002181	0.948	cytoplasmic translation
GO:0050896	0.823	response to stimulus
GO:0006959	0.560	humoral immune response
GO:0006950	0.488	response to stress
GO:0019730	0.475	antimicrobial humoral response
GO:0002251	0.469	organ or tissue specific immune response
GO:0061844	0.450	antimicrobial humoral immune response mediated by antimicrobial peptide
GO:0002385	0.447	mucosal immune response
GO:0050830	0.409	defense response to Gram-positive bacterium

C-score is the confidence score of a predicted GO term. Its value ranges from (0,1], where a higher value indicates a higher confidence prediction.
If a child GO term and its parent term have the same C-score, only the child term is shown in this table.

The graph shows the predicted terms for the Biological Process (BP) GO aspect. GO terms shown in the table are colored by C-score in the graph:

[0.3,0.4)

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

GO term	C-score	Name
GO:0022625	1.000	cytosolic large ribosomal subunit

C-score is the confidence score of a predicted GO term. Its value ranges from (0,1], where a higher value indicates a higher confidence prediction.
If a child GO term and its parent term have the same C-score, only the child term is shown in this table.

The graph shows the predicted terms for the Cellular Component (CC) GO aspect. GO terms shown in the table are colored by C-score in the graph:

[0.3,0.4)

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Predicted reactions (EC numbers and Rhea reactions)

Reaction	C-score	Name

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