StarFunc result for job id Q9NYK5

User Input

>input (338 residues)
MEALAMGSRALRLWLVAPGGGIKWRFIATSSASQLSPTELTEMRNDLFNKEKARQLSLTP
RTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSEWYCRKSILALVDGQPWDMYKPLT
KSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIERAFKDEYMVNLVRAPEVPVISGAFC
YDVVLDSKLDEWMPTKENLRSFTKDAHALIYKDLPFETLEVEAKVALEIFQHSKYKVDFI
EEKASQNPERIVKLHRIGDFIDVSEGPLIPRTSICFQYEVSAVHNLQPTQPSLIRRFQGV
SLPVHLRAHFTIWDKLLERSRKMVTEDQSKATEECTST

Proteins with similar structure

Top structural analogs (as identified by Foldseek and TM-align)

Rank	Structure template	TM-score1	TM-score2	Foldseek E-value	Length	ID1	ID2	Download	Description
1	AFDB:Q9NYK5	1.000	1.000	4.054E-68	338	1.000	1.000	Q9NYK5.pdb.gz	RM39_HUMAN Large ribosomal subunit protein mL39 OS=Homo sapiens OX=9606 GN=MRPL39 PE=1 SV=3
2	AFDB:Q9JKF7	0.923	0.928	5.009E-62	336	0.840	0.845	Q9JKF7.pdb.gz	RM39_MOUSE Large ribosomal subunit protein mL39 OS=Mus musculus OX=10090 GN=Mrpl39 PE=1 SV=4
3	PDB:6vlz7	0.861	0.979	8.007E-52	297	0.876	0.997	6vlz7.pdb.gz	Structures of the human mitochondrial ribosome bound to EF-G1 reveal distinct features of mitochondrial translation elongation.
4	PDB:3j7y7	0.779	0.989	3.148E-46	266	0.781	0.992	3j7y7.pdb.gz	Structure of the large ribosomal subunit from human mitochondria.
5	AFDB:Q9VUJ0	0.802	0.814	3.532E-34	333	0.352	0.357	Q9VUJ0.pdb.gz	RM39_DROME Large ribosomal subunit protein mL39 OS=Drosophila melanogaster OX=7227 GN=mRpL39 PE=2 SV=2
6	AFDB:P26639	0.677	0.330	6.779E-22	723	0.213	0.100	P26639.pdb.gz	SYTC_HUMAN Threonine--tRNA ligase 1, cytoplasmic OS=Homo sapiens OX=9606 GN=TARS1 PE=1 SV=3
7	AFDB:Q54J66	0.651	0.325	7.601E-22	710	0.222	0.106	Q54J66.pdb.gz	SYTC1_DICDI Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=thrS1 PE=3 SV=1
8	AFDB:Q3UQ84	0.661	0.324	1.348E-21	723	0.207	0.097	Q3UQ84.pdb.gz	SYTM_MOUSE Threonine--tRNA ligase, mitochondrial OS=Mus musculus OX=10090 GN=Tars2 PE=1 SV=1
9	AFDB:A0A2R8QF48	0.680	0.342	1.694E-21	701	0.213	0.103	A0A2R8QF48.pdb.gz
10	AFDB:A2BIM7	0.683	0.335	3.777E-21	718	0.213	0.100	A2BIM7.pdb.gz
11	AFDB:Q8BLY2	0.677	0.304	3.777E-21	790	0.195	0.084	Q8BLY2.pdb.gz	SYTC2_MOUSE Threonine--tRNA ligase 2, cytoplasmic OS=Mus musculus OX=10090 GN=Tars3 PE=1 SV=1
12	AFDB:Q5XIZ3	0.668	0.375	3.999E-21	624	0.201	0.109	Q5XIZ3.pdb.gz	Q5XIZ3_DANRE threonine--tRNA ligase OS=Danio rerio OX=7955 GN=zgc:92586 PE=1 SV=1
13	PDB:1qf6A	0.588	0.323	3.536E-14	641	0.142	0.075	1qf6A.pdb.gz	The structure of threonyl-tRNA synthetase-tRNA(Thr) complex enlightens its repressor activity and reveals an essential zinc ion in the active site
14	PDB:3wqyA	0.348	0.143	4.898E-8	905	0.086	0.032	3wqyA.pdb.gz	The selective tRNA aminoacylation mechanism based on a single G.U pair
15	PDB:3rfnA	0.345	0.703	9.379E-5	151	0.065	0.146	3rfnA.pdb.gz	Computational design of high-affinity epitope scaffolds by backbone grafting of a linear epitope.
16	PDB:1v4pC	0.334	0.653	3.706E-4	155	0.071	0.155	1v4pC.pdb.gz	Crystal structure of alanyl-tRNA synthetase editing-domain homolog (PH0574) from a hyperthermophile, Pyrococcus horikoshii OT3 at 1.45 A resolution
17	PDB:2e1bA	0.287	0.417	1.464E-3	216	0.047	0.074	2e1bA.pdb.gz
18	PDB:5iqr8	0.173	0.097	1.739E-3	615	0.115	0.063	5iqr8.pdb.gz	Ribosome-dependent activation of stringent control.
19	PDB:4a9aA	0.184	0.175	1.026E-2	356	0.036	0.034	4a9aA.pdb.gz
20	PDB:3plvA	0.166	0.563	1.622E-2	80	0.036	0.150	3plvA.pdb.gz	Role of the ubiquitin-like protein Hub1 in splice-site usage and alternative splicing.

(a)	The query structure is shown in cartoon, while the structural analog is displayed using a backbone trace.
(b)	Ranking of proteins is based on E-value of Foldseek alignment.
(c)	TM-score1 and ID1 are TM-score and sequence identity normalized by query sequence length.
(d)	TM-score2 and ID2 are TM-score and sequence identity normalized by template sequence length.

Proteins with similar sequence

Top sequence homologs in UniProt

Rank	Template	E-value	Bit-score	Length	ID1	ID2	Description
1	Q9JKF7	0.0	610	336	0.849	0.854	RM39_MOUSE Large ribosomal subunit protein mL39 OS=Mus musculus OX=10090 GN=Mrpl39 PE=1 SV=4
2	Q9NYK5	0.0	707	338	1.000	1.000	RM39_HUMAN Large ribosomal subunit protein mL39 OS=Homo sapiens OX=9606 GN=MRPL39 PE=1 SV=3
3	Q9VUJ0	1.40e-71	227	333	0.346	0.351	RM39_DROME Large ribosomal subunit protein mL39 OS=Drosophila melanogaster OX=7227 GN=mRpL39 PE=2 SV=2
4	Q54J66	3.45e-21	96.7	710	0.198	0.094	SYTC1_DICDI Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=thrS1 PE=3 SV=1
5	P87144	1.18e-20	95.1	703	0.234	0.112	SYTC_SCHPO Threonine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ths1 PE=3 SV=1
6	A8KC60	5.42e-19	90.1	718	0.231	0.109	A8KC60_DANRE threonine--tRNA ligase OS=Danio rerio OX=7955 GN=wu:fb39c12 PE=1 SV=1
7	Q5XIZ3	1.81e-18	88.6	624	0.222	0.120	Q5XIZ3_DANRE threonine--tRNA ligase OS=Danio rerio OX=7955 GN=zgc:92586 PE=1 SV=1
8	A2RTX5	2.76e-17	85.1	802	0.195	0.082	SYTC2_HUMAN Threonine--tRNA ligase 2, cytoplasmic OS=Homo sapiens OX=9606 GN=TARS3 PE=1 SV=1
9	Q9D0R2	3.63e-17	84.7	722	0.216	0.101	SYTC_MOUSE Threonine--tRNA ligase 1, cytoplasmic OS=Mus musculus OX=10090 GN=Tars1 PE=1 SV=2
10	B2RDX5	1.88e-15	79.7	711	0.207	0.098	B2RDX5_HUMAN threonine--tRNA ligase OS=Homo sapiens OX=9606 PE=1 SV=1
11	P26639	2.19e-15	79.3	723	0.207	0.097	SYTC_HUMAN Threonine--tRNA ligase 1, cytoplasmic OS=Homo sapiens OX=9606 GN=TARS1 PE=1 SV=3
12	Q57W54	2.48e-15	79.3	799	0.207	0.088	Q57W54_TRYB2 threonine--tRNA ligase OS=Trypanosoma brucei brucei (strain 927/4 GUTat10.1) OX=185431 GN=Tb05.28F8.150 PE=3 SV=1
13	Q53GX7	3.28e-15	79.0	723	0.207	0.097	Q53GX7_HUMAN threonine--tRNA ligase (Fragment) OS=Homo sapiens OX=9606 PE=2 SV=1
14	Q8BLY2	1.15e-14	77.4	790	0.175	0.075	SYTC2_MOUSE Threonine--tRNA ligase 2, cytoplasmic OS=Mus musculus OX=10090 GN=Tars3 PE=1 SV=1
15	Q8IP94	4.93e-14	75.1	690	0.169	0.083	Q8IP94_DROME threonine--tRNA ligase OS=Drosophila melanogaster OX=7227 GN=ThrRS PE=1 SV=1
16	Q8IGC5	4.96e-14	75.1	711	0.169	0.080	Q8IGC5_DROME threonine--tRNA ligase OS=Drosophila melanogaster OX=7227 GN=ThrRS PE=2 SV=1
17	Q9VKB0	6.72e-14	74.7	747	0.169	0.076	Q9VKB0_DROME threonine--tRNA ligase OS=Drosophila melanogaster OX=7227 GN=ThrRS PE=1 SV=2
18	Q8MRL7	1.37e-13	73.9	747	0.169	0.076	Q8MRL7_DROME threonine--tRNA ligase OS=Drosophila melanogaster OX=7227 GN=ThrRS PE=2 SV=1
19	Q8IIA4	1.98e-13	73.6	1013	0.154	0.051	Q8IIA4_PLAF7 threonine--tRNA ligase OS=Plasmodium falciparum (isolate 3D7) OX=36329 GN=PF3D7_1126000 PE=3 SV=1
20	O04630	2.49e-12	70.1	709	0.183	0.087	SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1 OS=Arabidopsis thaliana OX=3702 GN=THRRS PE=1 SV=3

(a)	Ranking of proteins is based on the E-value of a BLASTp alignment.
(b)	ID1 and ID2 are sequence identities normalized by the query and template sequence lengths, respectively.

Pfam families

Top Pfam family matches

Rank	Pfam family	E-value	Score	Description
1	PF10611 DUF2469	1.4e+02	14.4	Protein of unknown function (DUF2469)
2	PF02824 TGS	2.4	19.6	TGS domain

(a)	Ranking of Pfam families is based on the E-value provided by HMMsearch.

Protein-protein interaction (PPI) partners

Top PPI partners to 61622.XP_010381730.1

Rank	PPI partner	STRING score	Description
1	61622.XP_010358854.1	0.992	39S ribosomal protein L22, mitochondrial isoform X1
2	61622.XP_010385937.1	0.991	Mitochondrial ribosomal protein L58
3	61622.XP_010382233.1	0.990	Mitochondrial ribosomal protein L42
4	61622.XP_010379786.1	0.987	Belongs to the universal ribosomal protein uL13 family.
5	61622.XP_010354340.1	0.985	39S ribosomal protein L44, mitochondrial
6	61622.XP_010364719.1	0.983	Belongs to the universal ribosomal protein uL11 family.
7	61622.XP_010378574.1	0.983	Belongs to the universal ribosomal protein uL3 family.
8	61622.XP_010385442.1	0.983	39S ribosomal protein L9, mitochondrial isoform X1
9	61622.XP_010379878.1	0.982	39S ribosomal protein L32, mitochondrial
10	61622.XP_010361105.1	0.981	Mitochondrial ribosomal protein L19
11	61622.XP_010368059.1	0.981	Mitochondrial ribosomal protein L14
12	61622.XP_010377658.1	0.981	39S ribosomal protein L45, mitochondrial
13	61622.XP_010385075.1	0.981	Mitochondrial ribosomal protein L30
14	61622.XP_010386303.1	0.981	39S ribosomal protein L15, mitochondrial
15	61622.XP_010350847.1	0.980	Belongs to the bacterial ribosomal protein bL20 family.
16	61622.XP_010360596.1	0.980	Mitochondrial ribosomal protein L46
17	61622.XP_010353707.1	0.979	Belongs to the universal ribosomal protein uL24 family.
18	61622.XP_010355566.1	0.977	39S ribosomal protein L10, mitochondrial isoform X1
19	61622.XP_010362238.1	0.977	39S ribosomal protein L49, mitochondrial
20	61622.XP_010372448.1	0.977	Mitochondrial ribosomal protein L50

A higher STRING score indicates a greater likelihood of interaction.
The query and PPI partners are shown as grey oval and white rectangles, respectively.
Interactions between query and PPI partners are shown by solid black lines. Interactions among PPI partners are by dashed grey lines.
Values in the rectangles are the STRING scores between query and each corresponding PPI partner

Predicted Gene Ontology (GO) Terms

GO term	C-score	Name
GO:0003723	1.000	RNA binding
GO:0005515	0.946	protein binding

C-score is the confidence score of a predicted GO term. Its value ranges from (0,1], where a higher value indicates a higher confidence prediction.
If a child GO term and its parent term have the same C-score, only the child term is shown in this table.

The graph shows the predicted terms for the Molecular Function (MF) GO aspect. GO terms shown in the table are colored by C-score in the graph:

[0.3,0.4)

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

GO term	C-score	Name
GO:0009987	0.998	cellular process
GO:0071840	0.960	cellular component organization or biogenesis
GO:0016043	0.901	cellular component organization
GO:0071704	0.746	organic substance metabolic process
GO:0044237	0.735	cellular metabolic process
GO:0006807	0.712	nitrogen compound metabolic process
GO:0044238	0.689	primary metabolic process
GO:0007005	0.678	mitochondrion organization
GO:0043170	0.522	macromolecule metabolic process
GO:0034641	0.510	cellular nitrogen compound metabolic process
GO:1901564	0.453	organonitrogen compound metabolic process
GO:0010467	0.451	gene expression
GO:1901576	0.399	organic substance biosynthetic process
GO:0044249	0.398	cellular biosynthetic process
GO:0044260	0.394	cellular macromolecule metabolic process
GO:0019538	0.390	protein metabolic process
GO:0006412	0.375	translation

C-score is the confidence score of a predicted GO term. Its value ranges from (0,1], where a higher value indicates a higher confidence prediction.
If a child GO term and its parent term have the same C-score, only the child term is shown in this table.

The graph shows the predicted terms for the Biological Process (BP) GO aspect. GO terms shown in the table are colored by C-score in the graph:

[0.3,0.4)

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

GO term	C-score	Name
GO:0005739	0.999	mitochondrion
GO:0070013	0.996	intracellular organelle lumen
GO:0016020	0.990	membrane
GO:0032991	0.976	protein-containing complex
GO:0043232	0.976	intracellular non-membrane-bounded organelle
GO:0019866	0.945	organelle inner membrane
GO:0005743	0.944	mitochondrial inner membrane
GO:0005759	0.934	mitochondrial matrix
GO:0098798	0.929	mitochondrial protein-containing complex
GO:0044391	0.928	ribosomal subunit
GO:0005761	0.920	mitochondrial ribosome
GO:0005762	0.906	mitochondrial large ribosomal subunit

C-score is the confidence score of a predicted GO term. Its value ranges from (0,1], where a higher value indicates a higher confidence prediction.
If a child GO term and its parent term have the same C-score, only the child term is shown in this table.

The graph shows the predicted terms for the Cellular Component (CC) GO aspect. GO terms shown in the table are colored by C-score in the graph:

[0.3,0.4)

[0.4,0.5)

[0.5,0.6)

[0.6,0.7)

[0.7,0.8)

[0.8,0.9)

[0.9,1.0]

Predicted reactions (EC numbers and Rhea reactions)

Reaction	C-score	Name

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