SEQ2FUN

Download StarFunc

Download the StarFunc Singularity image and the prebuilt database archive:

Setup

mkdir StarFunc
cd StarFunc

wget https://seq2fun.dcmb.med.umich.edu/StarFunc/download/StarFunc.sif
wget https://seq2fun.dcmb.med.umich.edu/StarFunc/download/StarFunc_database.tar.zst

tar --zstd -xf StarFunc_database.tar.zst

If your system tar does not support zstd archives, use: 

zstd -dc StarFunc_database.tar.zst | tar -xf -

Run

Create one input directory for each protein. The directory must contain:

  • seq.fasta
  • input.pdb
mkdir example_job
# place seq.fasta and input.pdb inside example_job/

singularity run --bind "$PWD:$PWD" StarFunc.sif "$PWD/example_job" "$PWD/database"

StarFunc writes the prediction files to the input directory, including consensus.tsv.

Back to StarFunc server