******************************************************************** * US-align (Version 20260814) * * Universal Structure Alignment of Proteins and Nucleic Acids * * Reference: C Zhang, L Freddolino, Y Zhang. (2026) Nat Protoc * * C Zhang, M Shine, AM Pyle, Y Zhang. (2022) Nat Methods* * C Zhang, AM Pyle (2022) iScience. * * Please email comments and suggestions to zhang@zhanggroup.org * ******************************************************************** Name of Structure_1: US574866174A.pdb:_ (to be superimposed onto Structure_2) Name of Structure_2: US574866174B.pdb:_ Length of Structure_1: 525 residues Length of Structure_2: 545 residues Aligned length= 441, RMSD= 2.00, Seq_ID=n_identical/n_aligned= 0.193 TM-score= 0.81422 (normalized by length of Structure_1: L=525, d0=8.11) TM-score= 0.78576 (normalized by length of Structure_2: L=545, d0=8.23) (You should use TM-score normalized by length of the reference structure) ([0-9,a-z,A-Z] denote different aligned fragment pairs separated by different hinges) YEQDK--------TYKITVLHTNDHHGHFWRNE-----------------------------------------------------YGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKRQDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHMGHYDNGEHGCNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCKPDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVLYTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAAQMDRT-GADFAVMSGGGIRDSIEAG-DISYKNVLKVQPFG-NVVVYADMTGKEVIDYLTAVAQMKP-------DSGAYPQFANVSFVAK--D-G-K-LNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPRLDNKCGYV-NTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ---------- 00000000000000000000 00000000000000000000000000000000000000000000000000000000000000000 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 000000000000000 0000000000 0000000000000 0 000000000000000000000000000000000000000000000 0 000000000000000000000001111111111111 11111111111111111111 1111111111111111111 11111111111111 1111111111111111111111111 1111111111111111 1 1 1 1111111111111111111111 111 111111111 11111111111111111111111 111111111 -----RSLYDLPPYGDATLLYFSDLHGQAFPHYFMEPPNLIAPKPLMGRPGYLTGEAILRYYGVERGTPLAYLLSYVDFVELARTFGPIGGMGALTALIRDQKARVEAEGGKALVLDGGDTWTNSGLSLLTRGEAVVRWQNLVGVDHMVSH-WEWTLGRERVEELLGLFRGEFLSYNIVDDLFGDPLFPAYRIHRVGPYALAVVGASYPYVKVSHPESFTEGLSFALDERRLQEAVDKARA-EGANAVVLLSHNGMQ----------LDAALAERIR--GIDLILSGHTHDL-T----------------PRPWRVGKTWIVAGSAAGKALMRVDLKLWKGGIANLRVRVLPVLA--------------E---HLPKAEDVEAFLKAQLAPHQDHLFTPLAVSETLLYK----RDTLYSTWDQLVGEAVKAIYPEVEVVFSPAVRWGTTILPGQAITWDHLYAYTGFTYPELYLFYLRGAQIKAVLEDIASNVFTSDPFYQQGGDVSRVFGLRYVLDPDAPTGERVREVEVGGRPLDPNRRYLAAAY-GGR-------LQRVGEAKPGYEPRPIYEVLAEYLRSVGRVRVR--PEPNVKVIGRNYRLPEVTG #Total CPU time is 0.82 seconds
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(water of Structure_1 and Structure_2 in blue and red, respectively; non-water ligand of Structure_1 and Structure_2 in cyan and pink, respectively). |