******************************************************************** * US-align (Version 20260814) * * Universal Structure Alignment of Proteins and Nucleic Acids * * Reference: C Zhang, L Freddolino, Y Zhang. (2026) Nat Protoc * * C Zhang, M Shine, AM Pyle, Y Zhang. (2022) Nat Methods* * C Zhang, AM Pyle (2022) iScience. * * Please email comments and suggestions to zhang@zhanggroup.org * ******************************************************************** Name of Structure_1: US185232304A.pdb:A (to be superimposed onto Structure_2) Name of Structure_2: US185232304B.pdb:A Length of Structure_1: 165 residues Length of Structure_2: 167 residues Aligned length= 155, RMSD= 1.61, Seq_ID=n_identical/n_aligned= 0.968 TM-score= 0.88375 (normalized by length of Structure_1: L=165, d0=5.20) TM-score= 0.87413 (normalized by length of Structure_2: L=167, d0=5.24) (You should use TM-score normalized by length of the reference structure) ([0-9,a-z,A-Z] denote different aligned fragment pairs separated by different hinges) --cgcuucucggcc-uuuug--gc---uaagaucaaguguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc 111111111111 1 00 00 000000 0000000000000000000000000000000000000000000000002222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 aucgcuucucggccuu----uuggcuaag-aucaag-uguaguaucuguucuuaucaguuuaauaucugauguccucucgaggacggauuuuuggagcagggagauggaauaggagcuugcuccguccacuccacgcaucgaccugguauugcaguaccuccaggaacggugc #Total CPU time is 0.06 seconds
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(water of Structure_1 and Structure_2 in blue and red, respectively; non-water ligand of Structure_1 and Structure_2 in cyan and pink, respectively). |