Search found 3 matches

by sambitmishra
Thu Apr 28, 2022 3:30 pm
Forum: Main Forum
Topic: Error when using template restraint for I-TASSER standalone
Replies: 1
Views: 797

Error when using template restraint for I-TASSER standalone

Hi, I am using the I-TASSER standalone package to predict the structure of a protein of interest. Specifically, I am interested in using another protein (not in the PDB database) as template to predict the structure. The template pdb file is in fact a model from the I-TASSER webserver and is in the ...
by sambitmishra
Mon Apr 25, 2022 4:55 pm
Forum: Main Forum
Topic: Differences in the predictions by I-TASSER web server and standalone package
Replies: 5
Views: 828

Re: Differences in the predictions by I-TASSER web server and standalone package

Hi there,

Also wanted to ask: Does the I-TASSER webserver set the command line option -light to True when running calculations?

Thanks,
Sambit.
by sambitmishra
Mon Apr 18, 2022 7:43 pm
Forum: Main Forum
Topic: Differences in the predictions by I-TASSER web server and standalone package
Replies: 5
Views: 828

Differences in the predictions by I-TASSER web server and standalone package

Hi, I used I-TASSER to make predictions on a protein of interest and observe significant differences in predictions made by the web-server and the standalone package. The predictions made by the webserver are shown below. As you will notice, the best predicted structure (Model 1) has a TM-score of 0...