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Is that how the online service add protons to the structure? Also the sidechain orientations from the stand-alone version is quite different than the online version. Is that normal?
the "model1.pdb" generated by stand-alone version has ONLY the amide proton, but the one generated by the online server has all the protons. How to set the stand-alone version to generate all the protons?
I just installed the stand-alone i-tasser 5.1 on FC 25 and finished the 1st peptide structure prediction. However, I don't know which files to look at, eg, which file corresponds to the "Predicted Secondary Structure", "Top 10 templates used by I-TASSER", "Top 5 Models predi...