Zhanglab forum

Dear Xiaogen
thanks for your information.
best regards

Dear Xiaogen
I have one question about running DEMO. DEMO is using CPU or GPU for running or using both of them. because I have a problem with my GPU. I thank you if you help me with this matter.
best regards

thank you for your help

Dear Xiaogen
I have nr file in the nr folder but I did not have the uniclust30_2017_04 file in the uniclust30_2017_04 folder(figure 4). The volume of this folder is 68.6 GB(figure 16). also, I change the path in lines 32-35 in runDistPre.pl. file too(Figure 17).
thanks for your help
best regards

dear Xiaogen thanks for your response. I changed the path address of all libraries in the run_DEMO2.py file as you said in your previous message(Figure 11). I have one question why I should repeat the nr directory two times in the path for example /nr/nr and uniclust30_2017_04/uniclust30_2017_04? I ...

Dear Xiaogen
the settings of NR_DB, hhblitsdb, jackhmmerdb, hmmsearchdb, and MDlibpath in lines 55-59 of runDEMO.py can be see in Figure 10. The content of local_library folder can be seen in Figure 6.

Dear Xiaogen I checked the 'run_DEMO2.py' the lone 56 is line 55 and the line 161 is 146(figure 9) in my file. I set the path of uniclust30_2017_04 in line 55 of my run_DEMO2.py file. Also, I checked that 'hhblitsdb + "_a3m_db"' file existed in the uniclust30_2017_04 directory. I found tha...

Dear Xiaogen As you said. I changed the e name of the 'uniclust30' folder to 'uniclust30_2017_04(figure6) and also changed the address in the run_DEMO2.py file(figure5). but I got the error "the library is not complete. Please check it!" again. what is the problem and how can I solve it? t...

Dear Xiaogen
thanks for your response. The contents of my uniclust30 folder can be seen in Figure 4
I thank you for helping me.
best regards

Dear Xiaogen Thanks for your answer. I ran DEMO by the command that you sent me and I got this error: the library is not complete please check it(Figure1). when I searched in the DEMO package I did not find the library directory except lib and lib64(figure2). so, I put the library files in the local...