Search found 139 matches

by xiaogenz
Tue Jun 14, 2022 1:50 am
Forum: Main Forum
Topic: Predicted model using ITASSER software
Replies: 1
Views: 531

Re: Predicted model using ITASSER software

"top 5 final model" shows the final I-TASSER predicted model for your target sequence. " top 10 Identified stuctural analogs in PDB" shows the templates that may have similar structure to your target sequence, which are found in PDB. These templates are used to guide the structur...
by xiaogenz
Tue Jun 14, 2022 1:45 am
Forum: Main Forum
Topic: Final model predicted by the software
Replies: 1
Views: 492

Re: Final model predicted by the software

Yes. Models shown in the "Final Full-length Models Predicted by I-TASSER-MTD" part is the final and full model predicted by I-TASSER-MTD. "Top 10 Full-length Templates for Domain Assembly" just shows the templates used to guide the domain assembly for the full-length model constr...
by xiaogenz
Wed Jun 08, 2022 2:16 am
Forum: Main Forum
Topic: access the result of the job submitted
Replies: 2
Views: 573

Re: access the result of the job submitted

Which server do you use and what's the jobID? I will check for you.
by xiaogenz
Sat May 14, 2022 2:56 am
Forum: Main Forum
Topic: using cryo-em structures for modeling and docking
Replies: 1
Views: 347

Re: using cryo-em structures for modeling and docking

You can try to use the following servers which can use cryo-EM density maps to guide the structure modelling and domain assembly:
https://zhanggroup.org/DEMO-EM/
https://zhanggroup.org/CR-I-TASSER/
by xiaogenz
Tue May 10, 2022 1:44 am
Forum: Main Forum
Topic: QUARK server job QA15513
Replies: 1
Views: 388

Re: QUARK server job QA15513

Sorry! There is an issue of file systems on the EXPANSE cluster. We still need some time to deal with it.
by xiaogenz
Thu May 05, 2022 2:59 am
Forum: Main Forum
Topic: IonCom job 9264 not completed?
Replies: 2
Views: 460

Re: IonCom job 9264 not completed?

Sorry! The InCom server is not working now. We are trying to repair it.
by xiaogenz
Thu May 05, 2022 2:59 am
Forum: Main Forum
Topic: IonCom jobs status
Replies: 1
Views: 389

Re: IonCom jobs status

Sorry! The InCom server is not working now. We are trying to repair it.
by xiaogenz
Thu May 05, 2022 2:48 am
Forum: Main Forum
Topic: Differences in the predictions by I-TASSER web server and standalone package
Replies: 5
Views: 845

Re: Differences in the predictions by I-TASSER web server and standalone package

sambitmishra wrote: Mon Apr 25, 2022 4:55 pm Hi there,

Also wanted to ask: Does the I-TASSER webserver set the command line option -light to True when running calculations?

Thanks,
Sambit.
Thank you! The I-TASSER server uses the standard version rather than the light version.
by xiaogenz
Thu May 05, 2022 2:39 am
Forum: Main Forum
Topic: Differences in the predictions by I-TASSER web server and standalone package
Replies: 5
Views: 845

Re: Differences in the predictions by I-TASSER web server and standalone package

Hello, I'm from the NIH HPC team and Sambit also raised this issue with us. So is there a way around the issue? If we separately obtain HHsearch, can we set it up so that LOMETS uses it? And is there anything else we could set up separately? thanks and regards Afif Hi, Yes! You can search the templ...
by xiaogenz
Thu May 05, 2022 1:50 am
Forum: Main Forum
Topic: Pending job
Replies: 1
Views: 2677

Re: Pending job

Which server did you use? I will check it for you.