Zhanglab forum

Thank you for the info. Here is a snapshot of my nr folder. But I don't understand this part: "The issue major occurs after this step "$blastdir/blastpgp -b 1000 -j 3 -h 0.001 -d $db -i protein.fasta -C psitmp.chk -Q pssm.txt > blast.out" you can add the command before this line print...

Hi there, Thank you! I changed the "ITLIB/nr/nr" in runI-TASSER.pl to "ITLIB/nr/" and the problem is fixed. But I got a new problem with blastpgp. The error is "/home/jed/I-TASSER5.1/blast/bin/blastpgp is not working properly, please check". I read the runI-TASSER.pl an...

Hello there, yes, I replaced the "yourname". When I used ls, I have "Bfactor CNT DEP download_lib.pl GO ligand map nr PSSM SIG summary BPOCKET databases dotProfiles Enzyme home log MTX PDB receptor stride" in my ITLIB. The databases is my nr database. Thanks, Jed

Hello there, Thank you for your help. I ran the download_lib.pl again and it downloaded everything successfully this time. However, when I ran runI-TASSER.pl, I still got the error message: "Your library files are not complete, please download library with the script download_lib.pl" The c...

Hello there, I am having issues with installing the library. The error message I had was: "bzip2: Data integrity error when decompressing. Input file = (stdin), output file = (stdout) It is possible that the compressed file(s) have become corrupted. You can use the -tvv option to test integrity...