Search found 111 matches

by jlspzw
Mon Jan 30, 2023 8:28 pm
Forum: Main Forum
Topic: I-TASSER Internal server error
Replies: 3
Views: 38

Re: I-TASSER Internal server error

Dear user,

The issue has been solved.

Best
IT Team
by jlspzw
Mon Jan 30, 2023 7:50 pm
Forum: Main Forum
Topic: I-TASSER Internal server error
Replies: 3
Views: 38

Re: I-TASSER Internal server error

Dear user,

We are working on it and will let you know if it is solved. Thank you for letting us know it.

Best
IT Team
by jlspzw
Sun Jan 29, 2023 5:35 pm
Forum: Main Forum
Topic: I-TASSER Illegal division by zero during MUSTER
Replies: 3
Views: 77

Re: I-TASSER Illegal division by zero during MUSTER

Dear user,

Could you check how many lines are in your $ITlib/PDB/list file? You can use "more $ITlib/PDB/list" see the first line. Here $ITlib is your I-TASSER library path.

BTW, is that package I-TASSER? C-I-TASSER or D-I-TASSER?

Thank you.

Best
IT Team
by jlspzw
Sat Jan 28, 2023 4:45 pm
Forum: Main Forum
Topic: D-I-TASSER failed at pairmod
Replies: 2
Views: 126

Re: D-I-TASSER failed at pairmod

Dear user,

Thank you for using our tools. We are glad to hear you found the issue. Let us know if you need any help in the future.

Best
IT Team
by jlspzw
Wed Jan 25, 2023 2:45 pm
Forum: Main Forum
Topic: unexpected EOF in DeepMSA
Replies: 1
Views: 160

Re: unexpected EOF in DeepMSA

Dear user,

We have contacted the author of DeepFold, and all the related issues, you can report to him if you don't get feedback from him here.
His email address is robpearc@umich.edu .

Thank you.

Best
IT Team
by jlspzw
Sat Jan 14, 2023 1:55 am
Forum: Main Forum
Topic: Protein-Peptide binding predictions with DeepMSAFold-Multimer
Replies: 1
Views: 292

Re: Protein-Peptide binding predictions with DeepMSAFold-Multimer

Dear user,

We have temporarily changed it to 10, so you can try it if it works. For very short peptides (<10AA), we are not sure if it could get a reasonable result since we do not have any benchmark on it.

Best
IT Team
by jlspzw
Sat Jan 14, 2023 1:48 am
Forum: Main Forum
Topic: How can I input multi-chain sequence as fasta?
Replies: 3
Views: 503

Re: How can I input multi-chain sequence as fasta?

Dear user,

We are working on it, and the package will be available after our manuscript has been published.

Best
IT Team
by jlspzw
Thu Jan 12, 2023 1:17 pm
Forum: Main Forum
Topic: Bug in I-TASSER-MD download_lib.pl
Replies: 1
Views: 291

Re: Bug in I-TASSER-MD download_lib.pl

Dear user,

Thank you for reporting the bug. We will fix the issue.

Best
IT Team
by jlspzw
Wed Jan 11, 2023 1:06 am
Forum: Main Forum
Topic: Replicas picked for clustering and model genaration while using I-TASSER
Replies: 2
Views: 293

Re: Replicas picked for clustering and model genaration while using I-TASSER

Dear user, Thank you for using the I-TASSER. You can find some explanations on our CASP14 abstract, https://predictioncenter.org/casp14/doc/CASP14_Abstracts.pdf. Please see the Zhang-Server section. The numbers 8 and 3 are decided based on a benchmark test that aims to optimize the final model quali...
by jlspzw
Thu Jan 05, 2023 4:51 am
Forum: Main Forum
Topic: apply post translational modification in 3D structure
Replies: 1
Views: 373

Re: apply post translational modification in 3D structure

Dear user,

Based on our knowledge, there is no 3D modeling method that can model the structure of PTM sites.

Best
IT team