Zhanglab forum

Dear user,

The issue has been solved.

Best
IT Team

Dear user,

We are working on it and will let you know if it is solved. Thank you for letting us know it.

Best
IT Team

Dear user,

Could you check how many lines are in your $ITlib/PDB/list file? You can use "more $ITlib/PDB/list" see the first line. Here $ITlib is your I-TASSER library path.

BTW, is that package I-TASSER? C-I-TASSER or D-I-TASSER?

Thank you.

Best
IT Team

Dear user,

Thank you for using our tools. We are glad to hear you found the issue. Let us know if you need any help in the future.

Best
IT Team

Dear user,

We have contacted the author of DeepFold, and all the related issues, you can report to him if you don't get feedback from him here.
His email address is robpearc@umich.edu .

Thank you.

Best
IT Team

Dear user,

We have temporarily changed it to 10, so you can try it if it works. For very short peptides (<10AA), we are not sure if it could get a reasonable result since we do not have any benchmark on it.

Best
IT Team

Dear user,

We are working on it, and the package will be available after our manuscript has been published.

Best
IT Team

Dear user,

Thank you for reporting the bug. We will fix the issue.

Best
IT Team

Dear user, Thank you for using the I-TASSER. You can find some explanations on our CASP14 abstract, https://predictioncenter.org/casp14/doc/CASP14_Abstracts.pdf. Please see the Zhang-Server section. The numbers 8 and 3 are decided based on a benchmark test that aims to optimize the final model quali...

Dear user,

Based on our knowledge, there is no 3D modeling method that can model the structure of PTM sites.

Best
IT team